BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1201.p (824 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Jan... 904 0.0 gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [... 838 0.0 gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic pep... 97 4e-21 >gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Janthinobacterium sp. Marseille] Length = 762 Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/733 (60%), Positives = 572/733 (78%), Gaps = 8/733 (1%) Query: 24 IGLSILGLGVAGALLVVYALIFINPRLPSLDLITDYRPKVPLRIWSADKVLLGEFGEEKR 83 IGL I GLGV GAL++V+AL P LP+LD +TDYRPK+PLRI+SAD VL+GEFGEE+R Sbjct: 10 IGL-ITGLGVIGALILVFALTMAYPNLPALDSLTDYRPKIPLRIFSADNVLIGEFGEERR 68 Query: 84 SLVKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTITMQVA 143 +LV + +IP MK AVLAIED RF+EHGG+D++GI RA V + L G A QGASTIT QVA Sbjct: 69 NLVHIKEIPDIMKKAVLAIEDDRFFEHGGVDYVGIVRAAVHN-LSGGARQGASTITQQVA 127 Query: 144 RNVFLTKEKTLSRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAARTYFGK 203 RN FL+ E+TL RK+YEVLLA KIE L+KDQILEVYMNQIYLGQRA+GF++AA+ Y+GK Sbjct: 128 RNFFLSSEQTLKRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSSAAQIYYGK 187 Query: 204 DLKDITLAEAAMLAGLPKAPSAYNPIVNPKRAHIRQQYILQRMLDVGFITQAQYDKASKE 263 L+ IT+AEAAMLAGLPKAPSAYNP+VNPKRA RQQYILQRM +G+I++ +Y +A +E Sbjct: 188 KLQQITIAEAAMLAGLPKAPSAYNPVVNPKRAKARQQYILQRMYQLGYISEPEYTQAKEE 247 Query: 264 ELKVRAPGSQYTVHAEYVNEMVRQMVYAQYKEDTYTQGFNVYTTVNAADQQAAYQAVRKG 323 ELK++ S++ VHAEYV EM RQ+VY Q+KE+TYT+G NV+TT+ ADQ AAY AVR+G Sbjct: 248 ELKIKTNSSEFGVHAEYVAEMTRQLVYEQFKEETYTRGLNVFTTITKADQDAAYLAVRRG 307 Query: 324 VMDYDRRHGYRGPEETIELPANAEDRASAIDDVMDDHPDNDDILAAVVVAANPKQIDAVL 383 VMDY++RHGYRGPE IE+P N E+ +AI+ + +HPD+DD++AAVV+ A PK + AVL Sbjct: 308 VMDYEKRHGYRGPESYIEIPNNKEEAEAAIEVELANHPDSDDLVAAVVLEATPKLVRAVL 367 Query: 384 RSGDKISIKGEALRFVAAALSEKAKKDIRIAPGALIRVMQDAKQNWQVVQLPQVEAALVS 443 SG++I I+G L F A LSEKA + R+ GA+IRVMQ+ K W ++Q+P+V++A V+ Sbjct: 368 VSGEEIQIEGAGLTFAANLLSEKAAPNKRVKRGAVIRVMQEGKA-WSIIQMPEVQSAFVA 426 Query: 444 VVPQDGAIRALVGGFDFTQNNFNHVTQAWRQPGSTFKPFIYSAALEKGFAPASIVNDAPV 503 DGAIRALVGGFDF +N FNHVTQAWRQPGS+FKPFIYSA+LEKG +P++I+NDAP+ Sbjct: 427 ANTNDGAIRALVGGFDFNRNKFNHVTQAWRQPGSSFKPFIYSASLEKGLSPSTIINDAPI 486 Query: 504 SYPAGP--GQPNWEPKD-DETPAGPMTVRTALQKSVNLVAIRTLDYIGVPYARDFITGTY 560 S+ AG GQP WEPK+ D GPMT+R L KS N+++IR L IG Y +++IT + Sbjct: 487 SFDAGQTGGQP-WEPKNYDGKYDGPMTMRKGLAKSKNMISIRILHKIGAKYGQEYIT-RF 544 Query: 561 GFDTDKVPPYLPMALGAGQTNPLQLSAAYSVFANGGYKIQPYLISQITDARGKVLSKADP 620 GFD DK PPYL +ALGAG PLQ++AAYSVFANGGYKI PY+IS+ITDA GK+LS+ P Sbjct: 545 GFDADKNPPYLTLALGAGAVTPLQMAAAYSVFANGGYKISPYMISRITDANGKLLSEVKP 604 Query: 621 LIVGNGAPRVVAERNSYIMTNLLRSVAQAGTGARSNSIGRTDLAGKTGTTNDAVDGWFAG 680 + G+ A R + RN+++M ++L+ V +GT ++ ++ RTDLAGKTGTTND+ D WFAG Sbjct: 605 DMAGDEANRAIDPRNAFLMDSMLKGVVTSGTAIKAMALKRTDLAGKTGTTNDSFDAWFAG 664 Query: 681 YQHTLATVAWMGYDQPKSLGSKEFGAQLALPIWVDYMAKALKGVPQFDQPVPDGIRFIDG 740 YQ + +AW+G+DQPK+LG++E G LALPIW++YM KALK P ++ VP+GI ++G Sbjct: 665 YQPNIVGIAWIGFDQPKNLGNRETGGGLALPIWINYMQKALKDAPIVERTVPEGIITVNG 724 Query: 741 EPYYDNFTPNNGL 753 E YY P G+ Sbjct: 725 EYYYAESPPGLGV 737 >gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [Janthinobacterium sp. Marseille] Length = 807 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/732 (56%), Positives = 541/732 (73%), Gaps = 11/732 (1%) Query: 20 VAKFIGLSILGLGVAGALLVVYALIFINPRLPSLDLITDYRPKVPLRIWSADKVLLGEFG 79 +A FI + L L V Y L+FI P LPS+D +TDY+PK+PLR+++AD VL+GEFG Sbjct: 28 IAGFIASIFVAL-----LGVAYTLLFIVPNLPSIDALTDYKPKIPLRVYTADNVLIGEFG 82 Query: 80 EEKRSLVKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTIT 139 EE+R V + +IPA MKNA++AIED FYEHGG+D +G+ RA + +++R S SQGASTIT Sbjct: 83 EERRDFVSVANIPASMKNAIIAIEDNNFYEHGGVDVLGVVRAGLANLVR-SRSQGASTIT 141 Query: 140 MQVARNVFLTKEKTLSRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAART 199 MQVAR LT++KT SRKL EV+LA +IE LTKDQILE+YMNQIYLG+RA+GF +AAR Sbjct: 142 MQVARTFLLTRKKTYSRKLQEVILAYRIEKNLTKDQILELYMNQIYLGERAYGFGSAARI 201 Query: 200 YFGKDLKDITLAEAAMLAGLPKAPSAYNPIVNPKRAHIRQQYILQRMLDVGFITQAQYDK 259 YFGK ++D+T+AE+AMLAG+PKAP++ NP+VNPKRA RQQYIL+RM ++ FIT QY Sbjct: 202 YFGKPIQDLTIAESAMLAGIPKAPASANPVVNPKRATERQQYILKRMHELKFITDEQYKH 261 Query: 260 ASKEELKVRAPGSQYTVHAEYVNEMVRQMVYAQYKEDTYTQGFNVYTTVNAADQQAAYQA 319 A+ E+L V G+++ HAE+ E VRQ +YAQYK++TYT GF VYTT+ ADQ AAY A Sbjct: 262 AAAEKLNVLPDGNRFRTHAEHAAETVRQFMYAQYKDETYTSGFTVYTTLTKADQDAAYDA 321 Query: 320 VRKGVMDYDRRHGYRGPEETIELPANAEDRASAIDDVMDDHPDNDDILAAVVVAANPKQI 379 VR+GV+DYDRRHGYRGPE TI+LP ++ED AIDD + +PD+DD+ AAVV AN K I Sbjct: 322 VRRGVLDYDRRHGYRGPEATIDLPKDSEDLQQAIDDTLVKYPDSDDLRAAVVTEANAKLI 381 Query: 380 DAVLRSGDKISIKGEALRFVAAALSEKAKKDIRIAPGALIRVMQDAKQNWQVVQLPQVEA 439 A L SG+ + I G+ LRF A+ LS+KA ++ PG++IRV+QD K+ W + QLP+V A Sbjct: 382 RAQLLSGETVEITGDGLRFAASYLSDKATAQKKLQPGSVIRVVQDNKKKWGISQLPEVAA 441 Query: 440 ALVSVVPQDGAIRALVGGFDFTQNNFNHVTQAWRQPGSTFKPFIYSAALEKGFAPASIVN 499 A VSV QDG+IRALVGGFDF N F+HVTQAWRQPGST KPF+YSAALEKGF+P +++N Sbjct: 442 AFVSVNGQDGSIRALVGGFDFALNQFDHVTQAWRQPGSTIKPFVYSAALEKGFSPGTLIN 501 Query: 500 DAPVS--YPAGPGQPNWEPKDDETPA-GPMTVRTALQKSVNLVAIRTLDYIGVPYARDFI 556 DAP++ + G W P +D GP+T+RT L++S NLV+IR L I YA + + Sbjct: 502 DAPLAEDSESEQGSKAWNPGNDNGKYDGPVTMRTGLKRSKNLVSIRILRKITPAYAIEHL 561 Query: 557 TGTYGFDTDKVPPYLPMALGAGQTNPLQLSAAYSVFANGGYKIQPYLISQITDARGKVLS 616 T +GF+ DK P L + LG G PLQ++ AY+VFANGG+K+ PYLI ++ DARGKVL Sbjct: 562 T-HFGFEADKQPANLTLTLGTGSVTPLQMAGAYAVFANGGFKVPPYLIQKVVDARGKVLL 620 Query: 617 KADPLIVGNGAPRVVAERNSYIMTNLLRSVAQAGTG-ARSNSIGRTDLAGKTGTTNDAVD 675 +A G+ R + RN++I +++R V ++GTG S +GR+DLAGKTGTT++A+D Sbjct: 621 EAQHPQAGDETARAIDPRNAFITDSMMRDVVRSGTGYLASQRLGRSDLAGKTGTTDNAMD 680 Query: 676 GWFAGYQHTLATVAWMGYDQPKSLGSKEFGAQLALPIWVDYMAKALKGVPQFDQPVPDGI 735 GWFAGY + VAWMGYD+P+SLGS+EFG LALPIW+DYM AL+G P+ + P G+ Sbjct: 681 GWFAGYGRDIVAVAWMGYDKPRSLGSREFGGTLALPIWIDYMRTALRGKPEMAKVAPPGV 740 Query: 736 RFIDGEPYYDNF 747 +DG+ YD + Sbjct: 741 TQVDGDWSYDEY 752 >gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic peptidoglycan transglycosylase [Janthinobacterium sp. Marseille] Length = 231 Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 90/165 (54%) Query: 82 KRSLVKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARALVTDVLRGSASQGASTITMQ 141 K + + I ++K A++A ED F EH G+DW + +A ++ +G G STIT Q Sbjct: 61 KHKWIPYNRISNNLKRAIIASEDSNFSEHEGVDWDALQKAYEKNIKKGKVVAGGSTITQQ 120 Query: 142 VARNVFLTKEKTLSRKLYEVLLANKIEHALTKDQILEVYMNQIYLGQRAFGFAAAARTYF 201 +A+N+FL+ +++ RK EV++ +E+ + K++I E+Y+N + G FG AAA+ Y+ Sbjct: 121 LAKNLFLSGDRSYLRKGQEVIITYMLEYWMDKERIFEIYLNVVEWGVGIFGAEAAAQHYY 180 Query: 202 GKDLKDITLAEAAMLAGLPKAPSAYNPIVNPKRAHIRQQYILQRM 246 G + +AA LA + P Y+ R IL+RM Sbjct: 181 GVSAAQLGAPQAARLAVMLPNPRFYDGHRGTAYLARRTDLILRRM 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,792,103 Number of extensions: 73513 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 3 Length of query: 824 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 733 Effective length of database: 884,594 Effective search space: 648407402 Effective search space used: 648407402 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)