BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1200.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981980|ref|YP_001354761.1| cytochrome C [Janthinobacterium...   256   1e-69
gi|152981922|ref|YP_001355066.1| cytochrome c, class I [Janthino...    94   1e-20

>gi|152981980|ref|YP_001354761.1| cytochrome C [Janthinobacterium
           sp. Marseille]
          Length = 243

 Score =  256 bits (654), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 153/207 (73%)

Query: 35  RVVPGMSERVAACIACHGQQGRATADGYYPRIAGKPEGYLLHQLQSFRDGRRRYPMMNYL 94
           ++   +++RVAAC+ CHG++GRA +DGYYPRIAGKP GYL +QL +FRDG+R YP+M  +
Sbjct: 36  KIPDTIAQRVAACVVCHGKEGRAGSDGYYPRIAGKPAGYLYNQLINFRDGKRTYPVMTAM 95

Query: 95  LGNLSDAYLQQIAAFFAAQHPPYPPPVAADASAAVLERGRLLVHQGRPAQGIPACAACHG 154
           L N+SDAYL++IA +F+ QHPPYP P AA ++ A LERGR LVH G  A+GIPAC ACH 
Sbjct: 96  LENMSDAYLREIAQYFSEQHPPYPEPQAAQSNPAELERGRRLVHDGDKAKGIPACVACHS 155

Query: 155 AELAGVQPGIPGLLGLPRDYLTAQLGAWRNGERTAKAPDCMGQIARALSPEDLHAVSSWL 214
           A++ G  P IPGL+GLPRDYL  Q+GAW+ G R A  PDCM  I + +S ED+ A ++WL
Sbjct: 156 AKMTGTAPAIPGLIGLPRDYLLGQIGAWKIGTRHAAQPDCMADIVKKMSAEDISAAAAWL 215

Query: 215 SSQPVPPTYAPAATLPQALPVQCGSMS 241
           S Q VP   +PA  +   LP++CG ++
Sbjct: 216 SEQRVPADASPAPAITAKLPLECGKLA 242


>gi|152981922|ref|YP_001355066.1| cytochrome c, class I
           [Janthinobacterium sp. Marseille]
          Length = 219

 Score = 93.6 bits (231), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 8/185 (4%)

Query: 32  GEARVVPGMSER-VAACIACHGQQGRATADGYYPRIAGKPEGYLLHQLQSFRDGRRRYPM 90
           GEA    G + R V ACIACHG  G ++     P++ G+   Y+  QL  F+   R   +
Sbjct: 39  GEALYNTGDATRNVTACIACHGAAGNSSI-AENPKLTGQHGAYIHKQLVDFKGPARNNAI 97

Query: 91  MNYLLGNLSDAYLQQIAAFFAAQHPPYPPPVAADASAAVLERGRLLVHQGRPAQGIPACA 150
           M  +   +++  +Q + A+ A Q P    P AA     V E G+ +   G   + +PACA
Sbjct: 98  MAPIAKGMTEEDIQNVIAYLAKQKPS---PGAAKNKDTV-ELGKKIYRGGIAEKNVPACA 153

Query: 151 ACHGAELAGVQPGIPGLLGLPRDYLTAQLGAWRNGERTAKAPDCMGQIARALSPEDLHAV 210
           ACH A  AG+    P L G  + Y  AQL  +RNG R    P  M  +A+ +S E++ AV
Sbjct: 154 ACHSANGAGLPAQYPRLAGQHQTYTAAQLINFRNGTRKNSEP--MTTVAKRMSDEEIQAV 211

Query: 211 SSWLS 215
           S +++
Sbjct: 212 SDYVA 216


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 557,856
Number of extensions: 22133
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)