BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1199.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium...   463   e-132
gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II...    69   7e-13

>gi|152982318|ref|YP_001354762.1| cytochrome c [Janthinobacterium
           sp. Marseille]
          Length = 428

 Score =  463 bits (1192), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/431 (53%), Positives = 297/431 (68%), Gaps = 9/431 (2%)

Query: 1   MNQRLRLGLSLLLATVLLVLAAAGGVIAWQSLRSEDPGVA-VAVSDRQAQRLQGQYLARA 59
           M ++  L  S LL  ++ V     G + W + R+ D G A V  +D   Q +QG+YLAR 
Sbjct: 1   MKRQYLLRFSALLLGIITVFV---GWLYWAN-RNPDLGQASVPPTDPAQQLVQGEYLARV 56

Query: 60  GNCMGCHTMRGGAAYAGGRAIGTELGTLYTSNITPDKATGIGDWSADDFWRALHHGRGRD 119
           GNCM CHT RGG +YAGGRA+ T  G +YTSN+TPD  TG+G W+++DFW+A+H G+ +D
Sbjct: 57  GNCMSCHTSRGGESYAGGRAVPTPFGNIYTSNLTPDAETGLGKWNSNDFWQAMHDGKSKD 116

Query: 120 GRFLYPAFPYPNYTRLSRADSDALFAYLQGLPAASQPNRSHALRFPYDQRPLLGLWRAFF 179
           G  LYPAFPY NYT+++RADSDA+FAYLQ LPA SQ NR+  LRFPYD R  L +WRA +
Sbjct: 117 GSLLYPAFPYTNYTKVTRADSDAIFAYLQTLPAVSQQNRAPDLRFPYDNRVALYVWRALY 176

Query: 180 FTSGVYQPDPARSAQWNRGAYLVQGAGHCSACHSARNSLGASLAPLSLAGGMIPLQDWYA 239
           F  G Y  D  +S +WNRGAYL QG GHCSACHS R++LG +     L GGMIP+ +WYA
Sbjct: 177 FRPGQYANDDKQSVEWNRGAYLAQGLGHCSACHSPRDALGGTDLKAELGGGMIPVLNWYA 236

Query: 240 PPLHGGAQ-GLGSWSQEQVVALLKSGVSARGATLGPMSEVVGRSLQYLEEADLQAMALYL 298
           PPL+G AQ  LG+W  E + AL+K+G +   +  GPM+EVV  SLQY ++ D++AMALYL
Sbjct: 237 PPLNGDAQTSLGNWETEHLAALMKTGTAPSRSVSGPMAEVVFGSLQYAKDEDIKAMALYL 296

Query: 299 KSLPDATPTMPAQAEPV---EADQLFRQGKKLYGELCVDCHGSKGQGSAPDYPPLAGNHA 355
           KSLP   P   A AE V       + + G KLY   C  CH   G+G A  YP LAG+ A
Sbjct: 297 KSLPQQIPAPVAAAESVPDETKKNMIKAGAKLYENQCASCHQESGKGVAAIYPALAGSRA 356

Query: 356 IAGPQAVNAIRAVLNGGFPPSTADNPYPFGMPPFGPQLSDQEVAALVSFVRNSWGNQGSL 415
           I  P A NAIR VL+GG+ PSTA NP P+GMPPFG  ++D+EVA++V+++RNSWGNQ + 
Sbjct: 357 ITTPVATNAIRMVLHGGYAPSTAGNPRPYGMPPFGHSMTDEEVASVVTYIRNSWGNQATA 416

Query: 416 VSASEVNRYRS 426
           VS ++VNRYRS
Sbjct: 417 VSPNDVNRYRS 427


>gi|152982006|ref|YP_001354842.1| cytochrome c oxidase subunit II
           [Janthinobacterium sp. Marseille]
          Length = 386

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 14/107 (13%)

Query: 317 ADQLFRQGKKLYGELCVDCHGSKGQGSAPDYPPLAGNHAIAGPQAVNAIRAVLNGGFPPS 376
            D+L ++G+K+Y   C+ CH + G+G    +P L  +  + GP+A N I  V+ G     
Sbjct: 287 VDELVQRGEKVYTANCIACHQANGKGVPGSFPALDASPIVTGPKAAN-IHMVMEG----- 340

Query: 377 TADNPYPFGMPPFGPQLSDQEVAALVSFVRNSWGNQGS--LVSASEV 421
                    MP + P LSD E+AA++++ RN W N+ S  +V  +EV
Sbjct: 341 ------KGAMPAWKPVLSDTEIAAVITYTRNHWSNKASENIVQPAEV 381


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,001,057
Number of extensions: 42289
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)