BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1198.p (230 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 273 5e-75 gi|152981322|ref|YP_001355016.1| two components system response ... 140 7e-35 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 137 7e-34 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 132 1e-32 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 130 7e-32 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 273 bits (699), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 130/229 (56%), Positives = 166/229 (72%) Query: 1 MSKELAHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLP 60 M+ E IL+VEDEP I EL+ FT++GAG+ + A I + LP ++LLDWMLP Sbjct: 1 MAAEKPTILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLP 60 Query: 61 DSSGLVLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 D SGL LLS +R D++ LP+IMLTAK MEEDK+ GL+ GADDYVTKPFSP+EL AR+ Sbjct: 61 DQSGLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARIN 120 Query: 121 ALLRRKAPEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRA 180 ALLRRK PE + G IS+D VS+ + + + AEFKLL++ +AHPDR+FSR+ Sbjct: 121 ALLRRKTPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRS 180 Query: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSTE 229 QLLDKVWGDH IEERTVDVH++RLRK+L D H ++TVR +GY LST+ Sbjct: 181 QLLDKVWGDHVVIEERTVDVHVLRLRKALKDAEHLIKTVRSVGYMLSTK 229 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 140 bits (353), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 137/234 (58%), Gaps = 16/234 (6%) Query: 7 HILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLV 66 HIL+V+D+ I ELL +E G ++A++ Q R ++ + +++LD MLP GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 67 LLSELRRDQ-RTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRR 125 L ELR + RT +PV+MLTA+ E D++ GL GADDY++KPF+ +EL AR++++LRR Sbjct: 66 LCRELRAGKWRT--IPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRR 123 Query: 126 --------KAPEIGSQALRYGEISIDVERRQ-VSVAGKSVLLDQAEFKLLRYLVAHPDRI 176 + E +Q L +G+ +D R + G V L AE++LLR + HP R+ Sbjct: 124 ARMLPANLQVSE-PAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRV 182 Query: 177 FSRAQLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLA---HYVQTVRGMGYKLS 227 +R QLL+ G +R++D+ I RLR+ L D A Y++T+R GY S Sbjct: 183 LTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFS 236 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 137 bits (344), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 125/222 (56%), Gaps = 8/222 (3%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+VEDE E LR + AGF A D A+ +L + +V+LD MLP G L Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQL 62 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L ELR+ + T PV+ LTA+ ED+VKGL GADDY+ KPFS EL+ARV+ LLRR Sbjct: 63 LRELRKVRDT---PVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR-G 118 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P S + ++ IDV +R+V+ G+ + L EF LL L + SR+ + +VW Sbjct: 119 PVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVW 178 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH---YVQTVRGMGYKL 226 + + VDV I RLR L D H +QTVRG+GY L Sbjct: 179 DMNFDSDTNVVDVAIRRLRAKLDD-PHPRKLIQTVRGIGYVL 219 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 132 bits (333), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 133/231 (57%), Gaps = 10/231 (4%) Query: 10 MVEDEPSIAELLRFTMEGAGF----AATIASDVAQARKLIAESLPHMVLLDWMLPDSSGL 65 M+ED+ +A ++ + GF + T + + Q ++ A +VLLD MLPD+ GL Sbjct: 1 MIEDDQRLASMVATYLNQNGFEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDADGL 60 Query: 66 VLLSELR-RDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLR 124 + ++R + Q A++P++MLTAKG D+V GL GADDY+ KPF P+EL+AR++A+LR Sbjct: 61 DVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 125 RK--APEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQL 182 R+ + LR+G + ID++ R + + + + +F LL + R+ SR QL Sbjct: 121 RQQGVATNNERVLRFGRLEIDLDARVIRLDDQEKPVTSYQFNLLAAMADRAGRVLSREQL 180 Query: 183 LDKVWGDHTFIEERTVDVHIMRLRKSLGD---LAHYVQTVRGMGYKLSTEQ 230 +D V G+ +R++DVHI RLR ++ D + TVRG GY + Q Sbjct: 181 MDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAKAQ 231 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 130 bits (327), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 +L+VEDE E L+ + AGFA A++ L +++LD MLPD G + Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGWKI 62 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L LR ++P + LTA+ D+VKGL GADDY+ KPF+ EL+ARV+ LLRR Sbjct: 63 LHALR--SAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P L+ ++ +D+ RR + AGK + L EF LL +LV H + R+ + ++W Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 188 GDHTFIEERTVDVHIMRLRKSLGD--LAHYVQTVRGMGYKL 226 + + +DV I RLR + D + T+RG+GY L Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVL 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 496,924 Number of extensions: 19157 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 31 Length of query: 230 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 150 Effective length of database: 925,261 Effective search space: 138789150 Effective search space used: 138789150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)