BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1195.p (629 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980704|ref|YP_001353927.1| peptidase M41 (cell division pr... 1140 0.0 gi|152983151|ref|YP_001352500.1| hypothetical protein mma_0810 [... 90 4e-19 gi|152983095|ref|YP_001353428.1| hypothetical protein mma_1738 [... 87 2e-18 >gi|152980704|ref|YP_001353927.1| peptidase M41 (cell division protein) [Janthinobacterium sp. Marseille] Length = 627 Score = 1140 bits (2948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/629 (86%), Positives = 590/629 (93%), Gaps = 2/629 (0%) Query: 1 VNNMFSKAAIWVVIALVLFMVFKQFDSRSMATNAKPIAYSDFISEVKAGHIKDATIEDRN 60 +NNMFSKAAIWVVI +VLF VFKQFD R+ + +A +AYSDF+ EVK+ IK+ATIEDR+ Sbjct: 1 MNNMFSKAAIWVVIGMVLFTVFKQFDGRTASGSATAVAYSDFLDEVKSKRIKEATIEDRS 60 Query: 61 IIATTQDGTKVKTATTVLDRGLVGDLLNNGVKFDVRQPEEQSFLSQIFISWFPMLLLIGV 120 I+ATT DG K+K+A T LDRGLVGDL+NNGVKFDV+QPEEQSFLSQ+FISWFPMLLLIGV Sbjct: 61 IVATTTDGKKIKSAITYLDRGLVGDLVNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV 120 Query: 121 WIFFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT 180 WIFFMRQMQGGGKGGAFSFGKSKARMLD+ +N VTFADVAGCDEAKEEV ELV+FLRDPT Sbjct: 121 WIFFMRQMQGGGKGGAFSFGKSKARMLDDTNNPVTFADVAGCDEAKEEVGELVDFLRDPT 180 Query: 181 KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD 240 +FQKLGGRIP GVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD Sbjct: 181 RFQKLGGRIPRGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD 240 Query: 241 MFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIA 300 MF+NAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFE N+GVIVIA Sbjct: 241 MFDNAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEPNAGVIVIA 300 Query: 301 ATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPG 360 ATNRADVLDKALLRPGRFDRQV+VGLPDIRGREQIL VHMRKVPI DV+ADILARGTPG Sbjct: 301 ATNRADVLDKALLRPGRFDRQVIVGLPDIRGREQILLVHMRKVPIGTDVQADILARGTPG 360 Query: 361 FSGADLANLVNEAALFAARRNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHE 420 FSGADLANLVNEAALFAARRNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHE Sbjct: 361 FSGADLANLVNEAALFAARRNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHE 420 Query: 421 SGHAVVAKLLPKADPVHKVTIMPRGYALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIA 480 SGHAVVAKLLPKADPVHKVTIMPRG+ALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIA Sbjct: 421 SGHAVVAKLLPKADPVHKVTIMPRGFALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIA 480 Query: 481 EEIFMHQMSTGASNDFERATKLARAMVTRYGMSVTLGTMVYEDSEQDAYFGRMSSKTVSE 540 EE+FMHQMSTGASNDFERATKLARAMVTRYGMS +LGTMVYED+EQDAYFGR S+KTVSE Sbjct: 481 EEVFMHQMSTGASNDFERATKLARAMVTRYGMSESLGTMVYEDTEQDAYFGRSSAKTVSE 540 Query: 541 ATQQKVDAEIRSILDEQYALARRLLEENRDKVDVMAKALLEWETLDADQVNDIMNGDEPR 600 ATQQKVD EIR+ILD QYAL+R+L+EENRDKV++MAK LL+WET+D+DQ+NDIM G EPR Sbjct: 541 ATQQKVDTEIRTILDTQYALSRKLIEENRDKVELMAKTLLDWETIDSDQINDIMEGREPR 600 Query: 601 PPRNGTPTKKSSSDNNRSGDVSPNATAPA 629 PP+ G P +++ DN DV+P ATAPA Sbjct: 601 PPKAGIPVRRNPPDN--PTDVAPTATAPA 627 >gi|152983151|ref|YP_001352500.1| hypothetical protein mma_0810 [Janthinobacterium sp. Marseille] Length = 372 Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 22/221 (9%) Query: 170 QELVEFLRDPTKFQKL---GGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDF 226 ++ FL D +KL G H +++ GPPGTGKTLLA +A + + + Sbjct: 99 EQFASFLTDIKHHEKLAAAGIASKHSLMLAGPPGTGKTLLAGHVAAQLGRKLYVVRLDSL 158 Query: 227 VEMFVGVGASRVRDMFE-NAKKHAPCIIFIDEIDAVGRHRG--AGMGGGNDEREQTLNQM 283 + +G A +R +F+ A K A ++F+DE+DAV + R A +G E ++ +N + Sbjct: 159 ISSLLGDTAKNIRSVFDFVAGKDA--VLFLDELDAVAKMRDDRAELG----ELKRVVNTV 212 Query: 284 LVEMDGFEANSGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKV 343 + +D +A++ ++IAATN A +LD A+ R RF +++ LPD R + L+ + ++ Sbjct: 213 IQGIDSLDASA--VIIAATNHAQMLDSAIWR--RFHYKIIFTLPDFDLRTE-LWSYFLQL 267 Query: 344 PIAPDVKADILARGTPGFSGADLANLVNEAALFAARRNKRL 384 + IL+ + G SGAD+ E FAARR L Sbjct: 268 GPEHSLTCRILSCLSSGQSGADI-----EQWAFAARRRSAL 303 >gi|152983095|ref|YP_001353428.1| hypothetical protein mma_1738 [Janthinobacterium sp. Marseille] Length = 385 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 169 VQELVEFLRDPTKFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVE 228 + + +E +R + + P +LM G PGTGKT A+ IA E ++P T+ + Sbjct: 104 IADFLESVRHYDELRAARSATPLRLLMFGLPGTGKTQTAKWIASELQLPLLTVRCDTLIS 163 Query: 229 MFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMD 288 +G + +R +F+ ++ PC++ +DE DA+G RG+ G E ++ + +L +D Sbjct: 164 SLLGQTSKNLRRVFDYVEQR-PCVLLLDEFDALGNARGSERDIG--ELQRVVIALLQNID 220 Query: 289 GFEANSGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPD 348 N VIVIAA+N +LD A+ R RF Q+ + LPD R+ + + A D Sbjct: 221 ALSDN--VIVIAASNHEKLLDPAIWR--RFPFQIPMPLPDPALRDDMWTALLGSYAPA-D 275 Query: 349 VKADILARGTPGFSGADLANLV 370 + + L + G SGA + +V Sbjct: 276 LDWNALIEKSVGASGALIEQIV 297 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,358,780 Number of extensions: 54484 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 3 Length of query: 629 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 540 Effective length of database: 891,988 Effective search space: 481673520 Effective search space used: 481673520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)