BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1192.p
         (158 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980351|ref|YP_001353931.1| GreA transcription elongation f...   254   1e-69
gi|152981655|ref|YP_001353015.1| transcription elongation factor...   104   2e-24
gi|152981797|ref|YP_001351733.1| transcription elongation factor...    78   2e-16

>gi|152980351|ref|YP_001353931.1| GreA transcription elongation
           factor [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  254 bits (650), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 146/158 (92%), Gaps = 1/158 (0%)

Query: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
           MST P+T  GA +LKEELHRLKTK+RP VINAIAEARAQGDLSENA+Y++AKE+Q+FIEG
Sbjct: 1   MST-PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEG 59

Query: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
           RIAD+EGKLG +Q++DP  L AEGRVVFA+TVDLE+L+SGEKVTYQIVG+DEAD+KE KV
Sbjct: 60  RIADIEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKV 119

Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
           S+TSPIARA+IGK AGDVV VEAP+GL+EYEIL+VRY+
Sbjct: 120 SITSPIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157


>gi|152981655|ref|YP_001353015.1| transcription elongation factor
           GreB [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  104 bits (260), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)

Query: 6   LTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRIADL 65
           +T +G   +K EL +L   +RPEV+  ++ A + GD SEN +Y   K R   I+GRI  L
Sbjct: 29  MTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRIRFL 88

Query: 66  EGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSP 125
             +L  A++VDP+  +   ++ F +TV  E   +G++ T  I+G+DE D    K+S  SP
Sbjct: 89  TKRLDLAEVVDPSIHHGSDQIFFGATVRYET-QAGDEHTVTILGIDELDPLNGKISWISP 147

Query: 126 IARALIGKSAGDVVAVEAPSGLKEYEILEVRY 157
           +ARAL     GD V ++ P GL+E  ILEV Y
Sbjct: 148 VARALTKAREGDTVVLKTPGGLEELLILEVTY 179


>gi|152981797|ref|YP_001351733.1| transcription elongation factor
           GreB [Janthinobacterium sp. Marseille]
          Length = 175

 Score = 78.2 bits (191), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 68/101 (67%), Gaps = 3/101 (2%)

Query: 58  IEGRIADLEGKLGAAQIVDPAELNAEG-RVVFASTVDLENLDSGEKVTYQIVGLDEADIK 116
           IE RI  L+ ++ +A++VD A ++A+G R+ F ++VD EN  +GE  T  IVGLDE D  
Sbjct: 73  IEQRIHYLQTRVESAEVVD-ASVHADGDRIFFGASVDYENT-AGETHTATIVGLDELDPA 130

Query: 117 ESKVSVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRY 157
           + ++S  SP+A++L+G   GD V ++ P+G +E  +L VRY
Sbjct: 131 QGRISWLSPLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.310    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 332,867
Number of extensions: 12480
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 82
Effective length of database: 940,049
Effective search space: 77084018
Effective search space used: 77084018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)