BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1190.p
         (387 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980732|ref|YP_001353933.1| carbamoylphosphate synthase sma...   673   0.0  
gi|152980185|ref|YP_001351924.1| anthranilate synthase component...    63   3e-11

>gi|152980732|ref|YP_001353933.1| carbamoylphosphate synthase small
           subunit [Janthinobacterium sp. Marseille]
          Length = 384

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/385 (85%), Positives = 357/385 (92%), Gaps = 3/385 (0%)

Query: 3   PLLSGPAIPAVLALADGSVFQGFSIGAAGNTTGEVVFNTAMTGYQEILTDPSYSRQIVTL 62
           P  SGP +PA+LALADGS+F+GFSIGA G+T GEVVFNT+MTGYQEILTDPSYS QIVTL
Sbjct: 3   PFFSGPTVPAILALADGSIFKGFSIGAPGHTIGEVVFNTSMTGYQEILTDPSYSNQIVTL 62

Query: 63  TYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQQSLSDYLKEGNIVSIAGIDT 122
           TYPHIGNTGVN EDVE+++IHAAGLIIKDLP L+SNFRS Q+LSDYLK  N+V IAGIDT
Sbjct: 63  TYPHIGNTGVNAEDVESTRIHAAGLIIKDLPILISNFRSTQTLSDYLKSENVVGIAGIDT 122

Query: 123 RKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPGLAGMDLAKVVSTKKAYNWTE 182
           RKLTRILREKGAQ+GAI+AGE    A   KALELA++F GLAG+DLAKVVSTK++Y WTE
Sbjct: 123 RKLTRILREKGAQSGAILAGED---ATAEKALELAKSFGGLAGLDLAKVVSTKQSYPWTE 179

Query: 183 TEWRLGRGYGQQITPKFHVVAFDYGVKYNILRMLAERGCKVTVLPAQATAAEALALNPDG 242
           TEW LG GYGQQ  P++HVVAFDYGVK+NILRMLA+RGCKVTVLPAQA+AAEALALNPDG
Sbjct: 180 TEWTLGEGYGQQTAPQYHVVAFDYGVKFNILRMLAQRGCKVTVLPAQASAAEALALNPDG 239

Query: 243 IFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIMALASGAKTLKMKFGHHGANH 302
           IFLSNGPGDPEPCDYAIAASKELI+RGIPTFGICLGHQIMALASGAKTLKMKFGHHGANH
Sbjct: 240 IFLSNGPGDPEPCDYAIAASKELIDRGIPTFGICLGHQIMALASGAKTLKMKFGHHGANH 299

Query: 303 PVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPE 362
           PVQDLDSK+V+ITSQNHGFAVD ATLP NCRVTHVSLFDGSLQGFERTDKPAFCFQGHPE
Sbjct: 300 PVQDLDSKKVLITSQNHGFAVDAATLPVNCRVTHVSLFDGSLQGFERTDKPAFCFQGHPE 359

Query: 363 ASPGPHDIAPLFDKFVAMMEKKQNA 387
           ASPGPHDIAPLFD+FVAMMEK +NA
Sbjct: 360 ASPGPHDIAPLFDRFVAMMEKNKNA 384


>gi|152980185|ref|YP_001351924.1| anthranilate synthase component II
           [Janthinobacterium sp. Marseille]
          Length = 187

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 210 YNILRMLAERGCKV-TVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIER 268
           YN+++   E G  V TV   + T  +  ALNP+ I +S GP  P     ++   ++   +
Sbjct: 13  YNLVQYFGELGEDVHTVRNDEITLEQIAALNPERICISPGPCTPHEAGVSVPILQQFAGK 72

Query: 269 GIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPV--------QDLDSKQVMITSQNHG 320
            +P  G+CLGHQ +  A G K ++ +   HG    +        +DL S   +I  + H 
Sbjct: 73  -LPILGVCLGHQAIGAAFGGKVVRAQQVMHGKTSQITHTGVGVFKDLPSPYTVI--RYHS 129

Query: 321 FAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPHDIAPLFDKFV 378
            A+++A+LP    VT  +  DG + G    D      Q HPE+    H  A L +  V
Sbjct: 130 LAIERASLPDCLEVTAWT-DDGEIMGVRHKDFDIQGVQFHPESILSEHGHALLKNFLV 186


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 864,839
Number of extensions: 33050
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 302
Effective length of database: 906,776
Effective search space: 273846352
Effective search space used: 273846352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)