BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1188.p
         (203 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979777|ref|YP_001353937.1| hypothetical protein mma_2247 [...   230   4e-62
gi|152981876|ref|YP_001352372.1| hypothetical protein mma_0682 [...   142   2e-35

>gi|152979777|ref|YP_001353937.1| hypothetical protein mma_2247
           [Janthinobacterium sp. Marseille]
          Length = 183

 Score =  230 bits (587), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 140/187 (74%), Gaps = 20/187 (10%)

Query: 12  QTARVCALAAGLWISASAYSADLSLAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNR 71
           Q AR   LA  L +++SA+SA+        PPP+             N  I++LQ I+N 
Sbjct: 12  QLARSAVLAFSL-LASSAWSAEA-------PPPE------------QNAQISKLQSISNH 51

Query: 72  ASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTALEISRVGEKIG 131
           ASELA QA+ MLGI+Y+YGG++P++GLDCSGLVR++FKE WG  LPRT++EIS VG+ + 
Sbjct: 52  ASELAMQAMGMLGIHYKYGGSTPESGLDCSGLVRHIFKETWGLILPRTSVEISHVGKHVD 111

Query: 132 RDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGARR 191
           +D+LQPGDLVFYNTLR+GFSHVGIYLGD KFIHSPSAGGQVRIESMD +YWKKRFNG RR
Sbjct: 112 KDDLQPGDLVFYNTLRKGFSHVGIYLGDRKFIHSPSAGGQVRIESMDIAYWKKRFNGGRR 171

Query: 192 IIAGDDD 198
           I   + D
Sbjct: 172 ISEPEQD 178


>gi|152981876|ref|YP_001352372.1| hypothetical protein mma_0682
           [Janthinobacterium sp. Marseille]
          Length = 176

 Score =  142 bits (357), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 92/125 (73%)

Query: 66  QDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTALEISR 125
           Q ++ + +E+A  A+ M+   Y++GG +P+ GLDCSG+V Y++++A   ++  +A +I+R
Sbjct: 48  QPVSEKGNEIALYAMGMIDTGYQFGGKNPEAGLDCSGMVSYIYRQALNMNVSGSAADIAR 107

Query: 126 VGEKIGRDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKR 185
            G++I    L+PGDLVF+NT+ R FSHVG+Y+GDG+FIH+PS+ G+VRIE MD  Y+  R
Sbjct: 108 RGKEIDPRTLRPGDLVFFNTMNRSFSHVGVYIGDGRFIHAPSSKGKVRIERMDNVYFAPR 167

Query: 186 FNGAR 190
           F  AR
Sbjct: 168 FEMAR 172


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 371,507
Number of extensions: 14010
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 124
Effective length of database: 928,958
Effective search space: 115190792
Effective search space used: 115190792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)