BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1186.p
         (299 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982586|ref|YP_001352449.1| hypothetical protein mma_0759 [...   270   9e-74

>gi|152982586|ref|YP_001352449.1| hypothetical protein mma_0759
           [Janthinobacterium sp. Marseille]
          Length = 268

 Score =  270 bits (689), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 164/226 (72%), Gaps = 19/226 (8%)

Query: 2   NIVINEELKQYIDPLTPNEYAALERSLLAEGCRDALVLWGDVLIDGHNRYEICSKYELPF 61
           NI +N+ELK YIDPLT +EYAALERSLLAEGCRDALVLWGD+LIDGHNRY IC K+ + F
Sbjct: 4   NITVNDELKAYIDPLTSDEYAALERSLLAEGCRDALVLWGDLLIDGHNRYGICQKHGINF 63

Query: 62  KTIQNDSFSSLDDVLLWMIDNQLGRRSVSDFQRGMLALRKRDIIAARTKAEATPPKTATS 121
            T+QN+SF S+DDV LWMIDN LGRRSVSDFQRG+LALRK++I++ R             
Sbjct: 64  NTVQNESFKSMDDVHLWMIDNHLGRRSVSDFQRGVLALRKKEILSTRV------------ 111

Query: 122 DAHPAPEGGAPEAEQASDDPWHADDNTGRIKTREDIARAAGISSATIGQIDRIRKSAAPE 181
                    + EA  ++D             TR+ IARAA +SS T+GQI++I+K+A PE
Sbjct: 112 -------AQSKEATASTDAEAATPAAEEPALTRDVIARAARVSSVTLGQIEKIQKTATPE 164

Query: 182 LVEAVRSGTISINAAAAVATLPSEVQVNAVAGGKKELREAAKKVRE 227
           LV AV+SG +SINAAA +++LP E Q  AVAGGKKELR+ A++VRE
Sbjct: 165 LVNAVKSGVVSINAAAVISSLPEEKQKEAVAGGKKELRQVARQVRE 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 576,738
Number of extensions: 20097
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 216
Effective length of database: 914,170
Effective search space: 197460720
Effective search space used: 197460720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)