BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1185.p
         (196 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981605|ref|YP_001355235.1| hypothetical protein mma_3545 [...   139   1e-34

>gi|152981605|ref|YP_001355235.1| hypothetical protein mma_3545
           [Janthinobacterium sp. Marseille]
          Length = 197

 Score =  139 bits (349), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 111/181 (61%), Gaps = 3/181 (1%)

Query: 4   FTLAQRAEIELEIRKSRFIGIVMPVPGREAAMQEIARMRDAHRNATHVCWALMAGGQSGM 63
           + L   A  E+EI+KSRFIG++ P+  R  A  ++A +R  H NA H CW LM  G SG+
Sbjct: 2   YQLVAPASAEIEIKKSRFIGLLYPLTTRAEARAKLAELRAEHPNAVHFCWVLMCDGDSGL 61

Query: 64  SDDGEPSGTAGRPMLEVLRHHELDGVLAMVVRYYGGVKLGAGGLVRAYTDAIATALKSTQ 123
            DDGEPSGTA RPM  VL H ++  VLA+VVRY+GG+KLGAGGL RAY  AI+ A+K+ +
Sbjct: 62  DDDGEPSGTAARPMYNVLVHKDVFNVLAVVVRYWGGMKLGAGGLTRAYGQAISEAVKNAE 121

Query: 124 RTERVAQAEIEIGVVYAAEPQLRHWLAQQKYELLDSRHDTLAHLHLRLPEAALAQAEEAI 183
                A  E    + +A E   R +  QQ   +LD+++  +  L L++     +QAEE  
Sbjct: 122 LIPVEAMCERRYALQFADESTFRRYCEQQGVSVLDAQYGDIVTLRLKMK---CSQAEEFQ 178

Query: 184 R 184
           R
Sbjct: 179 R 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 416,181
Number of extensions: 16847
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 118
Effective length of database: 932,655
Effective search space: 110053290
Effective search space used: 110053290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)