BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1182.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ... 75 5e-15 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 57 2e-09 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 55 4e-09 >gi|152982762|ref|YP_001353011.1| transcriptional activator MetR [Janthinobacterium sp. Marseille] Length = 306 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 15/266 (5%) Query: 15 SRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPN 74 S L ++ L+ L+AL + +L +A++ L +TQSA S + +LE LFER + P Sbjct: 3 SILELRHLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKST---PV 59 Query: 75 QFGHCVIRYARLMATDLGSLCE---EMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQR 131 +F R +L T L + E ++ +L G G+L I + ++PA++ + Sbjct: 60 RFTPAGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRG 119 Query: 132 RHPELSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEH 191 R PE+ +DIV +GLL E D VA + D K Y L + +V+ +H Sbjct: 120 RWPEVELDIVSGFQADPVGLLYEHRAD--VAIVAEIDPDEKVDYHALFRFEIVALVAHDH 177 Query: 192 PRPRAKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQ 251 P + + G +TYP + V+ + + AGV ++ +T +TVA+LQ Sbjct: 178 PLADKEFLTAEDFIGDTLITYPVPDDMLDVVRQVLKPAGV-----QVARRTTELTVAMLQ 232 Query: 252 --QSSDLVSILPTAVAELFVKRGMLR 275 S ++ LP A+ ++ R ++ Sbjct: 233 LVASRRGIATLPVWAAQNYLNRDYVK 258 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 18/300 (6%) Query: 17 LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQF 76 + ++ L+ +A QS +AS +L +TQ S + ++E L QLF+R + Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 77 GHCVIRYARLMATDLGSLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEA-LQRRHPE 135 G YA+ ++ + + + +L + + GR+ G V+ + +P + A + +P Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFG-VLSSFGTFHLPPILADFNKVYPG 119 Query: 136 LSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRPR 195 + I ++ S ++ L +G L VA A S + + +PL PL++VV HP Sbjct: 120 IKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTE--QINVEPLFTVPLALVVGDHHPLVG 177 Query: 196 AKHMGLAALAGYRWV----TYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQ 251 + + L L + V Y S + A+L + M NAI +A ++ Sbjct: 178 SAGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEP-----ILATVR 232 Query: 252 QSSDLVSILPTAVAELFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSRAGEMFVRMLNE 311 SS L +IL A L + L +P+ +++ T+G+ TR+ LS A V + + Sbjct: 233 HSS-LATILS---ANLVDEMPGLHQVPLT-PTVTHTVGLFTRRNSHLSAAARALVDTIRQ 287 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 55.5 bits (132), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 2/202 (0%) Query: 17 LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQF 76 + ++QL+ + + + +A+ L MTQ S+S+ LE++L QLF RT + Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 77 GHCVIRYARLMATDLGSLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQRRHPEL 136 G ++ A+ + +L + M + SG GRL++ V A ++ + + +P++ Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 137 SIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPG-KYHYQPLSEEPLSVVVSGEHPRPR 195 ID+ E T+ L L +G +D+ + + D + Y P+ EPL + V R Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 196 AKH-MGLAALAGYRWVTYPSHM 216 K + L A+A + +P + Sbjct: 183 GKQTVALQAVAELPLIIFPRRI 204 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 621,955 Number of extensions: 23396 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 10 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)