BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1181.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase [J...    77   1e-15
gi|152981176|ref|YP_001353492.1| dihydrodipicolinate synthase [J...    66   3e-12

>gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 136/279 (48%), Gaps = 12/279 (4%)

Query: 21  GQLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVQVQNTVLEHVAGRVPVIVT 80
           G LDL G ++ ID+ I  G++GI I+    E   +S +E  ++    +EH A RVPVI  
Sbjct: 17  GSLDLPGLRKLIDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKRVPVIAG 76

Query: 81  TTHFGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFYGRVSDAIDIPIMIQ 140
           T    +    E ++ A+D GA   + + PY+    R +++ +Y+ + ++++A+D+P+++ 
Sbjct: 77  TGGNSTSEAIELTQFAKDVGADASLQVVPYYN---RPTQEGMYQHFKKIAEAVDLPVILY 133

Query: 141 DAP-VAGTPLSAPFLARMAKEIENVSYFKIETAGAASKLRELIELGGEAVVGPWDGEEAI 199
           + P      +S   + R++K +  +   K +  G   +  EL+ L  +     + G++A 
Sbjct: 134 NVPGRTVADMSNDTIVRLSK-VPGIIGVK-DATGNIGRGTELLRLVRKD-FAVYSGDDA- 189

Query: 200 TLIPDLDGGATG--AMTGGGYPDGIRKIVDAYFAGDTEKAAELYMQWLPLINYENRQCGL 257
           T +  +  GA G  ++T    P  + ++ DA       +A E+  + +PL      +   
Sbjct: 190 TAMALMFCGAKGNISVTANVAPRAMHQLCDAAVNQRVAEAVEINNKMIPLHTKLFIEPNP 249

Query: 258 SACKALMLAGGVIKSDMLRHPQAPLHPKVREGLLRVARR 296
              K  M+  G+I S M R P  PL  +  +  LR A R
Sbjct: 250 VPVKWAMVEMGLIASGM-RLPIVPLAAEYHD-TLRAALR 286


>gi|152981176|ref|YP_001353492.1| dihydrodipicolinate synthase
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 130/275 (47%), Gaps = 15/275 (5%)

Query: 20  HGQLDLEGQKRAIDFMIDAGSNGICILANFSEQFVLSDEERVQVQNTVLEHVAGRVPVIV 79
           +G++DL   ++  D +I+ G +G+ +     E   L D E+  +   + E    R P+ +
Sbjct: 17  NGEVDLPVAQKLADELINQGIHGLVVCGTTGEAAALDDIEQATLLAAINEVADKRCPLAM 76

Query: 80  TTTHFGSQICAER-SRAAQDAGAAMVMVMPPYHGATFRVSEKQIYEFYGRVSDAIDIPIM 138
             +   ++  AE+  R  + A AA ++  P Y     R S++ I   +  V+   + PI+
Sbjct: 77  GISGSSTRTVAEKVKRFNRHAPAAYLLSAPSY----VRPSQQGILWHFQAVAAQTEAPII 132

Query: 139 IQDAPV-AGTPLSAPFLARMAKEIENVSYFKIETAGAASKLRELIELGGEAVVGPWDGEE 197
           I + P   G  + A  +A +A++ E  +  K E++G  S+++++++      +    G++
Sbjct: 133 IYNIPARTGVNIEAATIAALAQD-ERFAAVK-ESSGQLSQVKDILD---HTRLQLLSGDD 187

Query: 198 AITLIPDLDGGATGAMTGGGY--PDGIRKIVDAYFAGDTEKAAELYMQWLPLINYENRQC 255
           A+ L+  L  G  GA++   +  PD    + D    G  E+AAEL+   LPLI     + 
Sbjct: 188 AL-LLSTLMLGGHGAISAAAHIRPDLFVHLYDLTRTGRNEEAAELFNALLPLIRLLFSEP 246

Query: 256 GLSACKALMLAGGVIKSDMLRHPQAPLHPKVREGL 290
                KA +   G ++ + LR P  P+    +E L
Sbjct: 247 NPGPVKAALALQGKLR-ETLRLPMTPMSVAGKEKL 280


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 691,710
Number of extensions: 26610
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)