BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1180.p (224 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981636|ref|YP_001354511.1| two-components system response ... 142 2e-35 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 67 7e-13 gi|152981350|ref|YP_001354553.1| two-components system response ... 63 1e-11 gi|152981322|ref|YP_001355016.1| two components system response ... 60 1e-10 >gi|152981636|ref|YP_001354511.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 1 MASILLIEDILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGRASGA 60 MA +LL+ED + YR + FL +GH+V + E + ++ DIA+++VG Sbjct: 1 MAKLLLLEDEV-DYRQE-IADFLRSEGHQVLEAGSAAEFTPLMDEM-DIALIDVGLPDAD 57 Query: 61 GYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVMLR 120 G+ L LR + GI++L + Q + +I+ L GAD P + + + A+I+ + R Sbjct: 58 GFELAALLRKHRNKCGIIMLTA-QGGINHKIASLRGGADHYLVKPVRYDELLAHIKALER 116 Query: 121 RVAPEAWRLDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAADRCAIAHAFGVEWVS 180 R+ WRLDT R L AP A ++ E+ L ++LA S A R IA+AFG +W+ Sbjct: 117 RMGLGGWRLDTLERKLYAPNGHAEALSDHELKLFELLAAQSGQAVSRRTIANAFGADWLD 176 Query: 181 FDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAIQ 222 +DER LE+ VSRLRR+WR++ +LP RT HG GY F I+ Sbjct: 177 YDERRLEQIVSRLRRRWRENCPEELPFRTEHGKGYSFCADIE 218 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 67.4 bits (163), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 48 DIAIVNVGRASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEK 107 D+ ++++ G ++ ++LR A + I++L + E V RI GL+ GAD A P Sbjct: 58 DLLVLDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVD-RIVGLEMGADDYLAKPFN 116 Query: 108 LELINAYIEVMLRRVAPE----------------AWRLDTAARTLRAPQHDAVEINSREV 151 + A I +LRRV PE + LD RTL+ + V + + E Sbjct: 117 PRELVARISAVLRRVGPEEIPGAPSETPQSFTFGEFVLDLGTRTLKK-NDETVPLTTGEF 175 Query: 152 ALLKVLANSSRHAADRCAIAH-AFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTV 210 ++LKV A +R R + A G E+ FD R L+ +SRLR+ L ++TV Sbjct: 176 SVLKVFARHARQPLSREKLMELARGREYEVFD-RSLDVQISRLRKLIEPDPSTPLYIQTV 234 Query: 211 HGVGYCF 217 G+GY F Sbjct: 235 WGLGYVF 241 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 35/236 (14%) Query: 4 ILLIED-------ILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGR 56 ILL ED + RS R S + K G + +++ TQ D+ I+++G Sbjct: 3 ILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLS--------TQDFDLLILDLGL 54 Query: 57 ASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIE 116 +G + Q+LR N+R+ +L+L + +S+ R+ GLD GAD A P L + A + Sbjct: 55 PKMSGLEVLQRLRARNSRLPVLILTA-GDSIEQRVKGLDLGADDFMAKPFALSELEARVR 113 Query: 117 VMLRRVA---PEAWR-----LDTAARTLRAPQHDAVEINSREVALLKVLAN-SSRHAADR 167 + RR A P + D R + +++++RE+ LL+VL S R + Sbjct: 114 ALTRRGAGGGPTVIKHGPLSYDQVGR-IAYINDQMLDLSARELGLLEVLLQRSGRLVSKE 172 Query: 168 CAIAHAFGVEWV-SFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYC---FTE 219 + H EW +E V RLR+K + L + TV G+GYC FTE Sbjct: 173 QLVDHL--CEWSEEVSNNAIEVYVHRLRKKIE---IGGLRIATVRGLGYCLEKFTE 223 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 22/236 (9%) Query: 5 LLIEDILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLG--DIAIVNVGRASGAGY 62 +LI D R R + S+LEK G + S + A+ ++ + G D+ ++++ G Sbjct: 7 ILIVDDDREIR-ELLASYLEKNGMRTS-LAANGRQMRTVLEQGSVDLIVLDLMLPGEDGL 64 Query: 63 ALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVMLRR- 121 L ++LR R +L+ + + T RI GL+ GAD + P + + A I +LRR Sbjct: 65 TLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 122 --------VAPEA-------WRLDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAAD 166 V+ A W+LDT AR L Q V ++ E LL+V + + Sbjct: 125 RMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLT 184 Query: 167 RCAIAH-AFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAI 221 R + + G + FD R ++ +SRLR++ +D ++T+ GY F+ A+ Sbjct: 185 RDQLLNLTQGRDADPFD-RSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 487,920 Number of extensions: 18190 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 4 Length of query: 224 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 144 Effective length of database: 925,261 Effective search space: 133237584 Effective search space used: 133237584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)