BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1176.p (309 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 125 5e-30 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 100 8e-23 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 99 2e-22 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 92 4e-20 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 82 3e-17 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 125 bits (313), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 19/294 (6%) Query: 5 DWTLYRSFLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAA 64 +W+ R FL + REG+L AAR L QPT+GR+++ALE ++ +LF R +G TD Sbjct: 3 EWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTDEG 62 Query: 65 QALLPHAQAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELR 124 A+L HA+ M A A QR A +++ G +R+T+S+ G VL P+L + +P + Sbjct: 63 AAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPRVT 122 Query: 125 VELVLSNDVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMD 184 +EL+ V L R+AD+A R+ + + AR++ + GL+AA+ + P+ D Sbjct: 123 IELLTDARVFSLARREADLAFRIQPFDEADVAARKLLHMPYGLYAAKGMAR----PQAGD 178 Query: 185 DLRRHTVIGPDRMSPALRTLVQRWPQ-------LDPAHLALRTDSDLAQLSLIRAGAGIG 237 G M + T P L A +ALR+++ Q + GAG+ Sbjct: 179 --------GAGSMLVTMDTAFDGAPDAVWLKRLLPHAQIALRSNNRDVQAQMCAHGAGLA 230 Query: 238 ICQAPLAARTPPLTRLLAQEFNLPLETWVVMHEDLRHHLRCSKVFEALVHGLGE 291 + L + P L + E +TW+ H+DLR R + + L+ L + Sbjct: 231 VLPRLLGDKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLIERLAD 284 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 1/202 (0%) Query: 12 FLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPHA 71 + V+ GS SGAAR L + T+ R+I LE LKTR+ RS L T+A QA + Sbjct: 11 LVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEAGQAYVAAC 70 Query: 72 QAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLSN 131 + + A+R + G + +T V G + + P++ + YP++ V +VL++ Sbjct: 71 RRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDINVRVVLAD 130 Query: 132 DVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRHTV 191 V LL DIAVR+ ++A RIGT++ + A+ YLK+ G P+ DDL +H Sbjct: 131 HVVHLLEEHVDIAVRVGELPDSNMVAARIGTINRVMCASPAYLKKNGTPKKPDDLSKHQC 190 Query: 192 IGPDR-MSPALRTLVQRWPQLD 212 I D M+P L L + +++ Sbjct: 191 ITFDGLMAPKLWQLCENGREIN 212 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 2/181 (1%) Query: 12 FLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPHA 71 F+ ++ GSL A+R L + P + R + LE + TRL R+ L T+A L Sbjct: 10 FIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEAGLHL--AQ 67 Query: 72 QAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLSN 131 QA +A Q D S + GT+++TA V G + PI+ S +YPE+RVEL+ ++ Sbjct: 68 QARRLLADYEQTVQEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEMRVELITND 127 Query: 132 DVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRHTV 191 DL+ D+ VR+ S ++ARR+G V L A+ DY++R G P+ + D+ H V Sbjct: 128 RNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSIADIAHHDV 187 Query: 192 I 192 I Sbjct: 188 I 188 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%) Query: 19 GSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPHAQAMESIA 78 GS + AA + + R I LEA L RLF R+ ++ TD + + + Sbjct: 23 GSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYFEQCREALAQL 82 Query: 79 AAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLSNDVQDLLH 138 A+R + + +G +R++ G L P+L RQRYP+++VE+ +SN D Sbjct: 83 VDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVHISNRNIDFAE 142 Query: 139 RQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRHTVI 192 D+A+R +P LIAR++ + L AA YLKR G P+ ++DL++H I Sbjct: 143 EAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQKHECI 196 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 91/181 (50%) Query: 12 FLHVMREGSLSGAARVLDLAQPTLGRQIQALEASLKTRLFTRSQTGLQPTDAAQALLPHA 71 F+ + R G+LS AAR LD+ P +++ LE+ L RL R+ + T + L +A Sbjct: 68 FVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIYLGYA 127 Query: 72 QAMESIAAAAQRTAADHSKEISGTVRLTASEVMGMEVLPPILKSLRQRYPELRVELVLSN 131 + + + + G +R+ A+ G + P++ +RYP++ V+ +S+ Sbjct: 128 ARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQFEVSD 187 Query: 132 DVQDLLHRQADIAVRMVSPHQERLIARRIGTVDCGLHAARDYLKRYGLPRCMDDLRRHTV 191 DL+ D+A+R + RL AR++ + L A+ YL+R+G P+ + DL RH Sbjct: 188 KPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADLSRHRC 247 Query: 192 I 192 I Sbjct: 248 I 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 665,986 Number of extensions: 25660 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 25 Length of query: 309 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 226 Effective length of database: 914,170 Effective search space: 206602420 Effective search space used: 206602420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)