BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1175.p (594 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [... 212 7e-56 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 209 4e-55 gi|152981002|ref|YP_001353865.1| signal transduction protein [Ja... 198 7e-52 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 198 9e-52 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 195 5e-51 >gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [Janthinobacterium sp. Marseille] Length = 558 Score = 212 bits (539), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 134/442 (30%), Positives = 221/442 (50%), Gaps = 23/442 (5%) Query: 158 VMARLDSLRVSSYVDSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYL 217 V A L L+ + D T LPNRS LL L +L + +S + V V + + + Sbjct: 117 VRAYLRHLKWIARHDLATQLPNRSALLDSLAALPKVKSNSNLH----VLVVVSLQNAM-- 170 Query: 218 GDMIKALGWDYVEGFLVQATERLRQAL-GEVALYRIGTTSFAYLERNERWQE----QARQ 272 ++ A G+D +E + Q+ R L +V +YRI L +N Q A Sbjct: 171 -ELKSAFGFDVIEEVIRQSAARYTNILQDKVQVYRIDPEQLGILVKNRDAQTINLLLAEL 229 Query: 273 VEGAFARTVEHQGIPHHLEVSVGIVPLSQCTDADELV-----PSLLTATDVARECGSRRC 327 V GA + + IP H + +G S+ + E +L++A + A +C Sbjct: 230 VRGA-RQPYQFNAIPIHADSRLGYATFSKVVQSPEFYLQRAESALISADEDALDC----V 284 Query: 328 HYEQPLGQMQKHSFELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHG 387 Y K + +L ++ +A+ QL L +QPK+ + +G+ VEAL+RW HP G Sbjct: 285 AYSPETSNFAKENLSILGSLMSAI-KEGQLSLHYQPKICIRTGEVHSVEALMRWNHPERG 343 Query: 388 VVSPGLFIPLAEKSALIRQVTLWVLQHGIEQAAAWARQGRAIPVAINVSARDFDNDDLVQ 447 + P +FIP AE+S LI +T + L+ ++Q W +QG +P+A+N+S R+ Sbjct: 344 NIPPAIFIPRAEQSTLINLITEFALEQAMKQIVLWRQQGIHLPIAVNISPRNLLQPGFSD 403 Query: 448 TLAAQLHRHRLPAGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSY 507 + + L R+ + +E+E TE A+ + ++ + + ++IDDFG G+S+L Y Sbjct: 404 LVLSLLQRYEVSGQSLELEVTEGALMTDIARTIIELSRLAEAKITISIDDFGTGYSSLQY 463 Query: 508 LKNIPADYLKIDQSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHL 567 L +P +KIDQSF+R + + IV + + L K+G +AEGVE + ++L L Sbjct: 464 LHQLPISLIKIDQSFVRRLPDDKGAVHIVEAAVTLAHKMGMQTIAEGVEEQSAYKLLSDL 523 Query: 568 GCEYGQGYGIARPMSAADTWDW 589 GC+ QGY I+RP+ AA+ W Sbjct: 524 GCDIAQGYMISRPLPAAEFEKW 545 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 209 bits (532), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 149/429 (34%), Positives = 223/429 (51%), Gaps = 17/429 (3%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQV-YLGDMIKALGWDYVE 230 D+LT LPNR+ LL D +Q SE + KLTA+A DQ ++ D +LG + Sbjct: 278 DALTGLPNRT-LLYD--RMQQAVLHSERYG-KLTAIAFLDLDQFKFIND---SLGHQVGD 330 Query: 231 GFLVQATERLRQALGEV-ALYRIGTTSFAYLERNERWQEQARQVEGAFARTVEHQGIPHH 289 L +RL L E + R G F L ++ +E V + Sbjct: 331 ELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKAND 390 Query: 290 LEVSVGI-VPLSQC----TDADELVPSLLTATDVARECGSRRCHY-EQPLGQMQKHSFEL 343 LE + + L+ C DA+ L+ + +A A+E G Y + EL Sbjct: 391 LEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLEL 450 Query: 344 LSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAEKSAL 403 L+ + A+ + D L +QPKV L S Q G EAL+RW G+VSP FIPLAE++ L Sbjct: 451 LNRLRQAITNED-FVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGL 509 Query: 404 IRQVTLWVLQHGIEQAAAWARQGRA-IPVAINVSARDFDNDDLVQTLAAQLHRHRLPAGL 462 I + WVL+ Q AW G IP+++N+S R D+V+ + L L A Sbjct: 510 IIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQH 569 Query: 463 IEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSF 522 +E+E TES M+ EK ++ + +++ LGVK+++DDFG G+S+LSYLK P D LKIDQSF Sbjct: 570 LELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSF 629 Query: 523 IRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIARPMS 582 +R++ ++ IV ++I LG+ L V+AEG+ETE + L GC+ GQGY +++P+ Sbjct: 630 VRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVP 689 Query: 583 AADTWDWIA 591 + D + Sbjct: 690 NKNFVDLLT 698 >gi|152981002|ref|YP_001353865.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 745 Score = 198 bits (504), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 141/436 (32%), Positives = 219/436 (50%), Gaps = 23/436 (5%) Query: 165 LRVSSYVDSLTSLPNRSRL--LVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGDMIK 222 L S++ DSLT LPNR+RL ++D +L+ S E+ S T +DI + + Sbjct: 323 LHNSAFYDSLTKLPNRTRLKEIID----DSLSSSKELPS---TLALIDID---HFAETND 372 Query: 223 ALGWDYVEGFLVQATERLRQALGE-VALYRIGTTSFAYLERNERWQEQARQVEGAFARTV 281 LG + + L+ RL+ LG+ + + R+G +F L + + A V F R Sbjct: 373 TLGHQFGDLLLLSVATRLQSRLGDRLIVARVGGDTFGVLGDDSQVNPAA--VLAQFERPF 430 Query: 282 EHQGIPHHLEVSVGIVPLSQ----CTDADELVPSLLTATDVARECGSRRCHYEQPLGQMQ 337 G L +VG+V LS+ +A + L + + G ++ + +G Sbjct: 431 SIDGQDVQLSATVGLVRLSEHEGRGVEALKNAHIALKRAKLQQRTG--HLYFSRNMGIDI 488 Query: 338 KHSFELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPL 397 + ++ A+ A F +L + +QP++ +++ Q G EALLRW ++SP FIP+ Sbjct: 489 RERVNMMHALRTA-FEERRLTVVYQPQIDMVTRQPVGAEALLRWTTEDGSMISPNRFIPI 547 Query: 398 AEKSALIRQVTLWVLQHGIEQAAAWARQGRA-IPVAINVSARDFDNDDLVQTLAAQLHRH 456 AE S LI ++ WVL+ ++ G A V++NVS F + + L LH Sbjct: 548 AEYSGLIIELGEWVLRQACQELVRIQSLGFADFMVSVNVSQVQFRHPHFLSMLRKALHDT 607 Query: 457 RLPAGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYL 516 PA +E+E TES + P+ L + +I GV +AIDDFG GFS+LS+L+ + D L Sbjct: 608 NAPAHCVELEITESMAMEEPDALIKLLDQITATGVSIAIDDFGTGFSSLSHLQKLSVDRL 667 Query: 517 KIDQSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYG 576 KID++F+ + + I +I LG+ L V+AEGVE ER IL LGC GQGY Sbjct: 668 KIDRAFVTEITDSSRGSSIAEMIIQLGRNLELDVIAEGVEDERQAAILTELGCPLGQGYL 727 Query: 577 IARPMSAADTWDWIAA 592 A+PMSA W+ Sbjct: 728 FAKPMSAEALHSWLGT 743 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 198 bits (503), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 154/499 (30%), Positives = 240/499 (48%), Gaps = 51/499 (10%) Query: 122 LASDGLRLGTLC---LIGKSPRAQFSAAEAHTLAQLA-----AIVMARLDS--------- 164 +A+ LG++C + G SP TLA LA +++ ARLDS Sbjct: 193 MAAANFPLGSICSAAVEGVSPGWLAIVVIVTTLAVLAIALLTSVLDARLDSQTGKLVRSL 252 Query: 165 ------LRVSSYVDSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLG 218 L + D+LT LPNR+ LL D L + + + + +D+ + Sbjct: 253 ALANQELTKQALQDNLTKLPNRT-LLED--RLDQMVHKAVREQSRFALMFIDLDGFKAIN 309 Query: 219 DMIKALGWDYVEGFLVQATERLRQAL-GEVALYRIGTTSFAYL-ERNERWQEQARQVEGA 276 D +LG + L+ +R+R + + R+G F L E NE E A V Sbjct: 310 D---SLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEVNE--PEDAASVADK 364 Query: 277 FART------VEHQGIPHHLEVSVGIVPLSQCTDADELVPSLLTATDVA----RECGSRR 326 T + + + + + P T D LL D A + G Sbjct: 365 LCTTLNQPFDIAQYNLGISASIGIAVYPEDGSTRHD-----LLIHADAAMYHTKSTGRNG 419 Query: 327 CHYEQPLGQMQKHS-FELLSAIPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPV 385 H+ + + H+ +++ + AL + L +QPK G G EALLRW+HP+ Sbjct: 420 YHFFEASMNINAHNQLQVIQDLRTAL-ERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPI 478 Query: 386 HGVVSPGLFIPLAEKSALIRQVTLWVLQHGIEQAAAWARQG-RAIPVAINVSARDFDNDD 444 G+V+P FI LAEK+ LI + WVL Q W +G + +A+N+S+ F ND+ Sbjct: 479 RGIVAPADFISLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDN 538 Query: 445 LVQTLAAQLHRHRLPAGLIEIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSN 504 LV+ + L R+ LPA + +E TES + E + ++++ LGV+++IDDFG G+S+ Sbjct: 539 LVEMVKETLARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSS 598 Query: 505 LSYLKNIPADYLKIDQSFIRNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRIL 564 L YLK +PA LKID+ FIR++ D IV +++ LG+ L +VAEGVETE+ + L Sbjct: 599 LLYLKRLPATELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYL 658 Query: 565 QHLGCEYGQGYGIARPMSA 583 LGC+ QGY + PM++ Sbjct: 659 TTLGCDTLQGYFMGHPMAS 677 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 195 bits (496), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/422 (30%), Positives = 216/422 (51%), Gaps = 15/422 (3%) Query: 172 DSLTSLPNRSRLLVDLQSLQALAGSSEVFSDKLTAVAVDICDQVYLGDMIKALGWDYVEG 231 D LT LPNR R LV+ +L +S + LT + CD + + G D+ + Sbjct: 446 DMLTDLPNR-RFLVN--TLNTAMETSRLRQSSLTML---FCDLDFFKSVNDTHGHDFGDQ 499 Query: 232 FLVQATERLRQALGEVALY-RIGTTSFAYLERNERWQE--QARQVEGAFARTVEHQGIPH 288 L++ ++R+ AL R G F L + + +A + A + + + Sbjct: 500 CLIEISKRIVTALPTADFVARFGGNEFVILTNSSLAEATIKANTIMAAVSERLIFDNVVV 559 Query: 289 HLEVSVGIVPLSQCTDAD-ELVPSLLTATDVARECGSRRCH-YEQPLGQMQKHSFELLSA 346 ++ S+GI L+ + +L+ A A+E G R Y+ L + A Sbjct: 560 KIQTSIGIAQLNAGHQSPADLIRDADAAMYQAKERGRNRTEIYDAALQSKTTKHARMDVA 619 Query: 347 IPAALFSSDQLWLEFQPKVGLLSGQCAGVEALLRWRHPVHGVVSPGLFIPLAEKSALIRQ 406 + AL ++L + +QPKV L G G E LLRW P +G++SP FIP+AE S ++ Sbjct: 620 LRFAL-ERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVP 678 Query: 407 VTLWVLQHGIEQAAAWARQ---GRAIPVAINVSARDFDNDDLVQTLAAQLHRHRLPAGLI 463 + +W ++ +Q AAW +Q ++ +AINVS R + L+ + ++ Sbjct: 679 IGMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMV 738 Query: 464 EIEFTESAMSKHPEKLYSKIQEIKRLGVKVAIDDFGAGFSNLSYLKNIPADYLKIDQSFI 523 E+E TE++ +P + + +K+LGV++A+DDFG G+S+L+YL+ +P D LKID++F+ Sbjct: 739 ELELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFV 798 Query: 524 RNMESNYSDQQIVPSMIHLGQKLGFAVVAEGVETERCRRILQHLGCEYGQGYGIARPMSA 583 R + SN SD +I+ M+ L Q L AEGVET + L+ +GC GQG+ + P++A Sbjct: 799 RGIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPLTA 858 Query: 584 AD 585 + Sbjct: 859 QE 860 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,317,659 Number of extensions: 52538 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 16 Length of query: 594 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 505 Effective length of database: 891,988 Effective search space: 450453940 Effective search space used: 450453940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)