BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1174.p (575 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 442 e-125 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 438 e-124 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 436 e-123 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 432 e-122 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 425 e-120 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust. Identities = 300/591 (50%), Positives = 388/591 (65%), Gaps = 39/591 (6%) Query: 1 MTLSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLES 60 M ++NLKI TRL GF L+ ++V++ V + +G + D+ + + + RL E Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADV--MTQTMLPKERLAQEW 58 Query: 61 LINIE-TGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQVADAQQ 119 L ++ GAR A ++ + A F++ +K N Q++ + + Sbjct: 59 LSAVDVNGARTLASAKTTSA-----EDQAFFQKQMDKTS--VRANELQKEIESMIKTPED 111 Query: 120 RWMSTAIEPAIALRRAVREGREEMGKLVAL-----AQSGRGKTEMDNMRAVFADMD---R 171 + + E + R A R+ R+ + KL A AQ + + M A +D + Sbjct: 112 KRL---FEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQ 168 Query: 172 AESQLLQQRSDAADQLEALTGKTLIIGGIIS-VMLAMLLAWWLSNHITRPLAVAVRLARQ 230 E +L+ + + + Q L+G++L+IG + + V L + AW L+ ITRPL AV +AR Sbjct: 169 NEKKLIDE-AGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVART 227 Query: 231 VAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDL 290 VA GDLSA IEV+S DETG+L+ AL+DM SL + VS VR GT+ IATAS QIASGNLDL Sbjct: 228 VASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDL 287 Query: 291 SSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTM 350 SSRTE+QASSL ETA+SM +LTSTV+QN+ NARQAN +A +ASD+A GG VVS VV TM Sbjct: 288 SSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTM 347 Query: 351 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 410 IN S+RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 348 ASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 407 Query: 411 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIE 470 AAAKEIK LI DSV KVE+GS LVNEAG TM EIVDSV+RVT ++ EI AA +EQ SGI+ Sbjct: 408 AAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGID 467 Query: 471 QVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTSS 530 QV+QA+GQMDQVTQQNAALVEEAAAA++SLQ+QA LA+ VS F+LD Q S+ Sbjct: 468 QVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGN--QPAFVSSLD 525 Query: 531 VAPVVK--TPAVVPAPVKPRREPRQPRLAAPMSA----GAMSGASDDWVTF 575 PVV+ TPA+ R + +P L+ P+ A A +GA DDW F Sbjct: 526 DIPVVRNTTPAI-------RTQAAKPLLSNPVHAPKREKATAGA-DDWEEF 568 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 438 bits (1127), Expect = e-124, Method: Compositional matrix adjust. Identities = 288/592 (48%), Positives = 377/592 (63%), Gaps = 48/592 (8%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLESLI 62 SN+KIG RL +GFG+V L L +++A +L A + + E+ M+ Sbjct: 4 FSNMKIGARLMLGFGVV---LALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 63 NIETGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQ----QRLQQVADA- 117 I T A GV S +P LA F + AD+S Q Q+L+ + + Sbjct: 61 AI-TKASIARTIGVAKSADP---ALAQFSAKF------AADDSKQSMEIIQKLEPLLNTD 110 Query: 118 QQRWMSTAIEPAIALRRAVREGREEMGKLVALAQSGRGKTEMD--------NMRAVFADM 169 Q++ + I + +R++ GRE + KL + D + + F + Sbjct: 111 QEKELYAKI---LDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEF 167 Query: 170 DRAESQLLQQRSDAADQLEALTGKTLIIGGIISVMLAMLLAWWLSNHITRPLAVAVRLAR 229 E + + + +EA + + L++ + + + AW L+ ITRPL AV AR Sbjct: 168 VELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAAR 227 Query: 230 QVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLD 289 +VAGGDL+ I+ S+DE G+LLAAL+DMN L RIV VR GT+ I TAS++IA+GNLD Sbjct: 228 RVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLD 287 Query: 290 LSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQT 349 LSSRTEQQASSLEETASSMEELTSTV+QN+ NARQAN +A +AS++A GG VVS+VVQT Sbjct: 288 LSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQT 347 Query: 350 MEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 409 M IN SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS Sbjct: 348 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 407 Query: 410 AAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGI 469 A+AAKEIKALI DSV KV++G+ LV EAG TM EIV+S++RVT ++ EI+AA +EQ +GI Sbjct: 408 ASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGI 467 Query: 470 EQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTS 529 EQ++QA+GQMD VTQQNA+LVEEAAAA++S+Q+QA++L Q V F+LD E P ++ S Sbjct: 468 EQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRA-S 526 Query: 530 SVAPVVKTPA------VVPAPVKPRREPRQPRLAAPMSAGAMSGASDDWVTF 575 V + PA V AP+ RR + GA+ A D+W F Sbjct: 527 GVTRLAPKPAAGSAGLAVAAPLPQRR-----------ANGALP-AGDEWEQF 566 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 436 bits (1120), Expect = e-123, Method: Compositional matrix adjust. Identities = 304/597 (50%), Positives = 387/597 (64%), Gaps = 52/597 (8%) Query: 1 MTLSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLES 60 M +SNLKIG RL + F A IL+L+ S+ V RL H E + RL E Sbjct: 1 MKISNLKIGMRLGLAF---AVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEW 57 Query: 61 LIN-----IETGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQ-- 113 + I T AR ++ A ++ ++K +L S + +LQ Sbjct: 58 YLGNVANAIRTAAR-------------IRSNDAEIQKQFQKEMEL---QSQEISKLQNEI 101 Query: 114 ----VADAQQRWMSTAIEPAIA---LRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVF 166 ++ ++ MS E A +R+ V + + E LA + +T+MD A + Sbjct: 102 VALIHSEEGKKLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAY 161 Query: 167 ADMDRA---ESQLLQQRSDA-ADQLEALTGKTLIIG-GIISVMLAMLLAWWLSNHITRPL 221 + +A Q++ QR+ A D L A +G+T++I G I+++L+ LAW LS ITRPL Sbjct: 162 NESVQAVVSFQQVIFQRAKADVDALYA-SGRTILITLGSIALILSAFLAWLLSRSITRPL 220 Query: 222 AVAVRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASS 281 AV +AR VA GDL I+ +S DETG+LL ALRDMN LV+ VS VR G + IATAS+ Sbjct: 221 DYAVSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASN 280 Query: 282 QIASGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGG 341 QIA+GNLDLSSRTE+QASSLEETASSMEELTSTV+QN+ NARQAN +A +AS +A GG Sbjct: 281 QIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGE 340 Query: 342 VVSRVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 401 VVSRVV TME+INAS++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 341 VVSRVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 400 Query: 402 VRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAA 461 VR+LAQRSAAAAKEIK LI DSV KVE GS LV EAG TM E+V SV+ VT +++EI AA Sbjct: 401 VRNLAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAA 460 Query: 462 GEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAE 521 +EQ +GIEQV+QA+GQMDQVTQQNAALVEEAAAA++SL EQA +LA+AVS+F+LD+ Sbjct: 461 SQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDS--- 517 Query: 522 QAPLQSTSSVAPVVKTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGAS---DDWVTF 575 T++ AP K V V P +A P++ +GA+ DDW F Sbjct: 518 -----ITAAAAPSKKVN--VGTRVASHGAPANRAIAVPVTKKISNGAATGGDDWEEF 567 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 288/582 (49%), Positives = 383/582 (65%), Gaps = 25/582 (4%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDM--NDHSYEVRAEMRLMLES 60 + NLKIG RL + FG V A+L++L +A+ +L AA M ND Y ++ ++ Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDR-YPKTVNAHIIKDT 59 Query: 61 LINIETGARGFALTG----VEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQVAD 116 L R L ++ L+ +++G E +K + T + + ++ + D Sbjct: 60 LNETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDR-TIKSEKGRTYIKALTD 118 Query: 117 AQQRWMSTAIEPAIALRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDR---AE 173 A+ R+ + +AL V +G +++ A+ + E +DR + Sbjct: 119 ARGRFTPVK-DKFVAL---VAQGMRAEAQILLFAEVRPAQLEY------MLGLDRLVEFQ 168 Query: 174 SQLLQQRSDAADQLEALTGKTLIIGGIISVMLAMLLAWWLSNHITRPLAVAVRLARQVAG 233 S L+ + + A ++ A + + I +I+V+++ L + + ITRPL+ AV LAR+VA Sbjct: 169 SNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVAD 228 Query: 234 GDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSR 293 GDL+ I VTS+DETG+LL AL+DMN LVRIV+ VR GTD IATASSQIA+GNLDLSSR Sbjct: 229 GDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSR 288 Query: 294 TEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEI 353 TE+QASSLEETASSMEELTSTV+QN+ NARQ+N +A AS++A GG VVS+VV+TM I Sbjct: 289 TEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSI 348 Query: 354 NASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 413 N S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA Sbjct: 349 NDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAA 408 Query: 414 KEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVS 473 KEIK LI DSV KV +GS LV++AG TM E+V+SV+RVT ++ EI+AA +EQ GIEQ++ Sbjct: 409 KEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQIN 468 Query: 474 QAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTSSVAP 533 QAV QMDQVTQQNAALVEEAAAA++SLQ+QA L+Q VS+F+LDA A LQ+TS VA Sbjct: 469 QAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANA--VALQATSRVAA 526 Query: 534 VVKTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGASDDWVTF 575 P V P + R + A A +G D+W F Sbjct: 527 PASRP--VSKPAQQIRSANVDKQIVRQRASATAGDGDEWEQF 566 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 425 bits (1093), Expect = e-120, Method: Compositional matrix adjust. Identities = 285/604 (47%), Positives = 374/604 (61%), Gaps = 64/604 (10%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAAND------------------MN 44 + NLKIG RL + FG ++++LLV +A + F R+G ND M Sbjct: 1 MKNLKIGQRLSLSFG---SMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMK 57 Query: 45 DHSYEVRAEMRLMLESLINIETGARGFALTGVEASLEPLQQGLAGFKE--HYEKARQLTA 102 D ++ MR +L+ E A LT + + + L L ++ E+ RQ A Sbjct: 58 DDLNQIARNMR---NALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIA 114 Query: 103 DNSAQQQRLQQVADAQQRWMSTAI-EPAIALRRA-VREGREEMGKLVALAQSGRGKTEMD 160 A + + + D + S I + A+AL A VR ++ L ++ + + E+ Sbjct: 115 GLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPA--QLSYLASIDKLIDYQNELM 172 Query: 161 NMRAVFADMDRAESQLLQQRSDAADQLEALTGKTLIIGGIISVMLAMLLAWWLSNHITRP 220 A+ +++QLL + I II+V++A + A + ITRP Sbjct: 173 KKSGAEANAKASQTQLL-----------------IGIFSIIAVLIAAVFAVLATRSITRP 215 Query: 221 LAVAVRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATAS 280 L+ AV LAR+VA GDL+ I V S+DETG+LL AL+DMN L++IV+ VR GTD IA+AS Sbjct: 216 LSQAVVLARKVADGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASAS 275 Query: 281 SQIASGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGG 340 QIA+GNLDLSSRTEQQASSLEETASSMEELTSTV+QN+ NARQ+N +A +AS++A GG Sbjct: 276 HQIATGNLDLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGG 335 Query: 341 GVVSRVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 400 VVS+VV TM EIN S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+ Sbjct: 336 AVVSKVVDTMGEINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 395 Query: 401 EVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISA 460 EVR+LAQRSA+AAKEIK LI DSV KV GS LV++AG TMRE+V+SV+RVT +++EI+A Sbjct: 396 EVRTLAQRSASAAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITA 455 Query: 461 AGEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQA 520 A +EQ GIEQ++QAV QMDQVTQQNAALVEEAAAA++SLQ QA L+Q V +F+LD Sbjct: 456 ASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHG 515 Query: 521 E---------QAPLQSTSSVAPVVKTPAVVPAPVKPRREPRQPRLAAPMSAGAMSGASDD 571 AP Q + + ++ + R PR P A D+ Sbjct: 516 TTVVNAVPTYTAPEQPKVAGKAALHKVKTTQQKIEDKEFARVPRNVVP--------AGDE 567 Query: 572 WVTF 575 W F Sbjct: 568 WEQF 571 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 779,639 Number of extensions: 22901 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 21 Length of query: 575 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 487 Effective length of database: 895,685 Effective search space: 436198595 Effective search space used: 436198595 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)