BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1172.p (577 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 512 e-146 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 501 e-143 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 482 e-137 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 481 e-137 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 465 e-132 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 512 bits (1319), Expect = e-146, Method: Compositional matrix adjust. Identities = 312/581 (53%), Positives = 399/581 (68%), Gaps = 21/581 (3%) Query: 3 IRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKV 62 ++++KI RL + F +++AV+ V+AV+ L + A + +DRY K + I + + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 NTAARALRNAIIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQEAR 122 N AR +RNA++ D A ++ + + + + L++ + + KG+ L +AR Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 SSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQSD 182 + +DK + L+ Q AE LF EV PAQ +Y L + FQ +M + + Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 AASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAATSK 242 SANA + +LS +AV++S FL TRSITRPL++AV +A VA GDLT I TSK Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEETA 302 DETG LL +L+ MN+ L RIV+ VR GTDTI TASS+IA+GNLDLSSRTEEQA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDIIS 362 S+MEELTSTVKQNADNARQ+N LA TAS+VA++GG+VVS+VV+TMG IND++ KIVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTSVE 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LID SVE Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 RVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V+NGSRLV AG TM EVV SV+RVTD++ EITAAS EQ+DGIEQINQA++QMD+VTQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSH-----DQQRAAAPAAAPRTQRTVDVT 537 NAALVEEAAAAA+SLQ+Q+ L + VS+FKL ++ R AAPA+ P + Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQATSRVAAPASRPVS------- 533 Query: 538 PRPAALPRKPAARPSSAASAPASRPTMQAAAAVDGD-WEQF 577 KPA + SA +A A DGD WEQF Sbjct: 534 --------KPAQQIRSANVDKQIVRQRASATAGDGDEWEQF 566 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 501 bits (1291), Expect = e-143, Method: Compositional matrix adjust. Identities = 281/514 (54%), Positives = 377/514 (73%) Query: 3 IRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKV 62 ++++KI RL + F +++ ++ V+A + + ++DA E+ DRY K L N + + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 NTAARALRNAIIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQEAR 122 N AR +RNA++ ++A + + T +N+ + +LEK + + +G++ LQ R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 123 SSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQSD 182 S + +D I+L E LF EV PAQ Y A++ + +Q +M++ A+++ Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 183 AASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAATSK 242 A ++ + + S +AVL++ + A L TRSITRPL++AV +A VA GDLT I SK Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 243 DETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEETA 302 DETG LL +LK MN+ L +IV+ VR GTDTI +AS +IA+GNLDLSSRTE+QA +LEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 303 SAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDIIS 362 S+MEELTSTVKQNA+NARQ+N LA +AS+VA++GG+VVS+VV TMG+IND+++KIVDII Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTSVE 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LI SV+ Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 423 RVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +V GSRLV+ AG TM EVV SVKRVTD+++EITAAS EQ+DGIEQINQA++QMD+VTQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSH 516 NAALVEEAAAAA+SLQ Q+ L + V +FKL H Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLDGH 514 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 482 bits (1241), Expect = e-137, Method: Compositional matrix adjust. Identities = 291/575 (50%), Positives = 378/575 (65%), Gaps = 16/575 (2%) Query: 5 DIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKVNT 64 ++KI RL + F ++A+ IA G++ L VS T ++ K +V+ T Sbjct: 6 NMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA--AIT 63 Query: 65 AARALRNAIIAP--DQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQEAR 122 A R +A D A A + A +++++ +++ LE LNT + KE++ K+ + R Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVR 123 Query: 123 SSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQSD 182 S+ R+ +++L + K AE Y +PA D + + + M+ G AQ Sbjct: 124 KSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLS 183 Query: 183 AASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAATSK 242 A + +++LSA+ + + A+ +T ITRPL AV A VA GDLT I A SK Sbjct: 184 DVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESK 243 Query: 243 DETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEETA 302 DE G LLA+LK MND L RIV VR GT+TI TAS+EIA+GNLDLSSRTE+QA +LEETA Sbjct: 244 DECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETA 303 Query: 303 SAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDIIS 362 S+MEELTSTVKQNADNARQAN LA +AS+VA++GG VVS+VVQTM IN++SRKIVDIIS Sbjct: 304 SSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIIS 363 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTSVE 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI SV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVG 423 Query: 423 RVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 482 +VD G++LV +AG TM+E+V S++RVTD++ EITAAS EQS GIEQINQAI QMD VTQQ Sbjct: 424 KVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQ 483 Query: 483 NAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDVTPRPAA 542 NA+LVEEAAAAA+S+Q+Q+ +L + V FKL D + A P PR + P+PA Sbjct: 484 NASLVEEAAAAAESMQDQARKLGQVVGAFKL---DNAQEANP---PRASGVTRLAPKPA- 536 Query: 543 LPRKPAARPSSAASAPASRPTMQAAAAVDGDWEQF 577 A A +AP + A +WEQF Sbjct: 537 -----AGSAGLAVAAPLPQRRANGALPAGDEWEQF 566 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 481 bits (1237), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/547 (52%), Positives = 372/547 (68%), Gaps = 15/547 (2%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGE 60 MKIR K+++ GV FA L+ VI ++ L ++++ I DRY K L N + Sbjct: 7 MKIRQ-KLTLSFGVVFALLV----VITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQI 61 Query: 61 KVNTAARALRNAIIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQE 120 +VN A LR+ +++ D A + V + +++N+ + L T + Sbjct: 62 EVNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIV 121 Query: 121 ARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQ 180 AR Y RD +++L + KTAE YL + +P Q KYF AL M +Q ++M Sbjct: 122 ARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMN---VA 178 Query: 181 SDAASANAVN--TMV-VLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQI 237 DAASA +V T++ +L+ +++LLS+ + +TRSITRPLN AV VA VA GDL+ + Sbjct: 179 GDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPV 238 Query: 238 AATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGA 297 + +E G L+A+LK MNDNLH IV+ VR GT TI AS EIA GN+DLSSRTE+QA + Sbjct: 239 FVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASS 298 Query: 298 LEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKI 357 LEETASAMEELTSTV++NADNA+QAN LA +A++VA QGGSVV EV+ TM IN +S+KI Sbjct: 299 LEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKI 358 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLI 417 DI VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA EIK LI Sbjct: 359 ADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALI 418 Query: 418 DTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMD 477 D SV +VDNGS+LV+QAG T++EVV SV ++ +VA I+ AS EQS GIEQ+ QAIVQ+D Sbjct: 419 DDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQID 478 Query: 478 EVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDVT 537 E TQQNAALVE++AAAAQSL+EQ+ +L++ VSIFKL D+Q + A +AAP + VT Sbjct: 479 EGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKL---DRQ-SVATSAAPAAGKLHLVT 534 Query: 538 PRPAALP 544 A LP Sbjct: 535 TSTALLP 541 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 292/582 (50%), Positives = 377/582 (64%), Gaps = 19/582 (3%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGE 60 M I +++I RL + F A+ +M + V+ + + + ++V +VK I Sbjct: 1 MNILNVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATI-- 58 Query: 61 KVNTAARALRNA--IIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKL 118 V T A A RN ++ + A N + +++ + L+K + T KGK + + Sbjct: 59 DVTTRANARRNMELLMETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALMQEF 118 Query: 119 QEARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGV 178 +EAR Y K+ +L+ E L E +PA D + +T Q M+E+ Sbjct: 119 KEARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEERG 178 Query: 179 AQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIA 238 A + A+ M+VL A+A + + A+ IT SIT+PL+EAV++A VAAGDLT I Sbjct: 179 ATAAGHIDAAIQMMMVLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAAGDLTSVIE 238 Query: 239 ATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGAL 298 A KDETG LL +LK MN +L RIV VR T+ I AS++IASGN+DLSSRTEEQA +L Sbjct: 239 AKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSL 298 Query: 299 EETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIV 358 EETAS+MEELT TV+QNADNARQAN LA TAS VA +GG VVS+VV TMG IND+++KI Sbjct: 299 EETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIA 358 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLID 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIG 418 Query: 419 TSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDE 478 SV++V+ GSRLV+ AG+TM+EVVASV+RVTD++ EITAAS EQ+ GIEQINQA++QMD Sbjct: 419 DSVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDS 478 Query: 479 VTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDVTP 538 VTQQNAALVE+AAAAA SLQ Q+G L + V +FKL H + PA TP Sbjct: 479 VTQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKL-HHSEALHVLPA-----------TP 526 Query: 539 RP--AALPRKPAARPSSAASAPASRPTMQAAAAVDGD-WEQF 577 + + LP+K AA + + P + + AV GD WEQF Sbjct: 527 KATVSVLPQKAAAVQIANKAVPPPKEGKRPELAVAGDEWEQF 568 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 851,198 Number of extensions: 27031 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 22 Length of query: 577 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 489 Effective length of database: 895,685 Effective search space: 437989965 Effective search space used: 437989965 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)