BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1168.p (506 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 136 4e-33 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 101 1e-22 gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 91 2e-19 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 76 6e-15 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 147/493 (29%), Positives = 222/493 (45%), Gaps = 44/493 (8%) Query: 8 KSAVELRQLIGSKQLSPVELLDACIARI--EDINPHINAVTATCFERARQEARAAEQAVL 65 K+ EL L+ SKQ+S EL + RI D+N ++ A +EA A+Q L Sbjct: 4 KTLKELSALLHSKQISATELAQLFLDRIAQSDLNAFLHVDPALTL----KEAALADQR-L 58 Query: 66 AGGPLGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPTHDNALVARLRAAGAIVAGKTN 125 A G +L G+PI KD+ T +T GS + V D +V + + AG + GK N Sbjct: 59 ASGDTTVLTGIPIAHKDIFVTRDWRSTAGSKMLENYVSPFDATVVEQFKQAGMVHLGKLN 118 Query: 126 VPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAADLLPLCSGSDTGGSLRIPA 185 E G+++ N+ +GA NP++ GGSSGGSAAA+AA L P + +DTGGS+R PA Sbjct: 119 CDEFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPA 178 Query: 186 AKCGVVGLRPSPGLVPSQRKPLGWTPISVVGPMGRDVADTVLQLRATIGLHDSDPLSYPV 245 A CGV G++P+ G V + + GP+ + D L L A G D S Sbjct: 179 ALCGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIER 238 Query: 246 SASEFATLPPVDLSQLRIGY-TEDFG---VCDVDDGIRQVFRNKIAAISRFV-------Q 294 +F L L+IG E FG DV+ +R + + V + Sbjct: 239 DKEDFTRDLNQPLQGLKIGLPREYFGAGLAADVEQAVRAALKEYEKLGATLVDISLPKTE 298 Query: 295 VCEPVQVDMGEAHRAFDVIRAEAFVAGFEAA--------YRRDPAS-LGPNTRANYEMGA 345 + P + A + ++ R + G+ A YR+ A G + +GA Sbjct: 299 LSIPTYYVIAPAEASSNLSRFDGVRYGYRAKDYTDLSDMYRKTRAEGFGEEVKRRILVGA 358 Query: 346 ---AMSLQDCAWAQGEQTR--IFRRFQQLYERYDLILSPTTPVSPFPWSELYLKEVNGVA 400 + D + Q ++ R I + FQQ + + D+I+ P P W L + Sbjct: 359 YVLSHGYYDAYYLQAQKIRRLIAQDFQQAFTQCDVIMGPVCPT--VAWD---LGDKADDP 413 Query: 401 LENYYRWLALTYVVTLATNPAISLPC----GRDHRGMPFGLQVTGAFRRDARLLAWAAAL 456 + NY + T +LA P +S+PC G + P GLQ+ G + +A+LL A Sbjct: 414 IANYLADI-FTLSTSLAGLPGMSIPCGFGQGEKNSKRPVGLQIIGNYFAEAKLLNVAHQY 472 Query: 457 EQAFAGDDALRRP 469 +Q A D LR+P Sbjct: 473 QQ--ATDWHLRQP 483 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 132/472 (27%), Positives = 198/472 (41%), Gaps = 63/472 (13%) Query: 7 EKSAVELRQL---IGSKQLSPVELLDACIARIEDINPHINAVTATCFERARQEARAAEQA 63 + ++ L+QL I ++++ ++ A I IE+ P ++A ++ ++AR + Sbjct: 3 DYASASLKQLAACIARREVTVEDVARAGITHIEEYEPAVHAWQHFDPQQVIEQARRLD-- 60 Query: 64 VLAGGPLGLLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPTHDNALVARLRAAGAIVAGK 123 A GLL+GLPIG+KDL +T + TTYGSPIY P D A VA R+AGA++ GK Sbjct: 61 --AQPHQGLLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLVDAACVAASRSAGAVLMGK 118 Query: 124 TNVPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGS--------AAALAADLLPLCSGS 175 T E AT P P N G++ + AAA+A+ ++P + Sbjct: 119 TVTTEF------------ATFQP-GPTRNPHGATDHTPGGSSSGSAAAVASGMVPAAFAT 165 Query: 176 DTGGSLRIPAAKCGVVGLRPSPGLVPSQRKPLGWTPISVVGPMGRDVADTVLQLRATIGL 235 T GS+ PAA CGVVG +P+ G +P + VG + R+VAD + A L Sbjct: 166 QTAGSIVRPAAYCGVVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNVADAAFFIGALARL 225 Query: 236 HDSDPLSYPVSASEFATLPPVDLSQLRIGYTE----DFGVCDVDDGIRQVFR--NKIAAI 289 PLS + L P +LR+G + D I Q R + A+ Sbjct: 226 ----PLS--------SQLAPEAAPRLRVGICRTPNWERASVATRDAIEQAVRLLERSGAV 273 Query: 290 SRFVQVCEPVQVDMGEAHRAFDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSL 349 R + + P G ++ EA A FE R A E G + Sbjct: 274 LRDIDLPAPCG---GLTDAQIRIMSYEA-SAAFEPEARSHAEGFSKAFAAVLEAGRGIDG 329 Query: 350 QDCAWAQGEQTRIFRRFQQLYERYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLA 409 AQ + ++E D++L+P+T E A + Sbjct: 330 TSYVAAQALAAASRQMVAGVFETVDILLAPST-------------EGEAPAGLDATGDPI 376 Query: 410 LTYVVTLATNPAISLPCGRDHRGMPFGLQVTGAFRRDARLLAWAAALEQAFA 461 + +L NP + +P G GMP G+ + G DA LA A LE FA Sbjct: 377 FNRMWSLLGNPCVHVPLGAGPGGMPIGVTLIGPRWGDASTLAAANLLESTFA 428 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 174/396 (43%), Gaps = 36/396 (9%) Query: 69 PLG-LLHGLPIGIKDLEETEGLLTTYGSPIYRGNVPTHDN--ALVARLRAAGAIVAGKTN 125 PLG L G+ +KD+ + G T G+P++ P + A V RL + GA GKT Sbjct: 37 PLGNKLEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTL 96 Query: 126 VPEMGAGANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAADLLPLCSGSDTGGSLRIPA 185 E+ N +G NP +P GGSS GS AA+AA L + G+D GGS+R+PA Sbjct: 97 TDELTYSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPA 156 Query: 186 AKCGVVGLRPSPGLVPSQRKPLGWTPISVVGPMGRDVADTVLQLRATI-GLHDSDPLSYP 244 + CGV G+RP+ G + VG ADT+ L T L ++ S P Sbjct: 157 SYCGVWGMRPTHGRLSGHGCLTLAHSFDTVGWF----ADTLEHLEQTFCALAHAETTSMP 212 Query: 245 VSASEFATLPPVDLSQLRIGYTEDFGVCDVDDGIRQVFRNKIAAISRFVQVCEPVQVDMG 304 + F TL ++ L +D + F S F+ V ++++ Sbjct: 213 AT---FLTLNDSGINGL------------LDPAVFDAFSKLKNEQSDFLAV--DSELELA 255 Query: 305 EAHRAFDVIRA-EAFVA-GFEAAYRRDPASLGPNTRANYEMGAAMSLQDCAWAQGEQTRI 362 AF +++A EA++ G D LG + R + + A ++ AQ + Sbjct: 256 SWAAAFRILQASEAWMEHGLWVTQHAD--ELGVDIRQRFNIAAGVTATQVRTAQEVRIAA 313 Query: 363 FRRFQQLYE-RYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLATNPA 421 R ++ + ++ +I+ PT P +P P V+ V + + + L + LA P Sbjct: 314 IRELNRILDSQHKVIVLPTVP-TPAPLLTADSATVDDVRMRSQH----LLCIAGLAGLPQ 368 Query: 422 ISLPCGRDHRGMPFGLQVTGAFRRDARLLAWAAALE 457 +S+P + + G P GL + G D +L A L+ Sbjct: 369 LSMPWIQVN-GAPVGLSIIGGRGCDEIVLHAAHKLQ 403 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 156/392 (39%), Gaps = 34/392 (8%) Query: 73 LHGLPIGIKDLEETEGLLTTYGSPIYRGNVPTHDNALVARLRAAGAIVAGKTNVPEMGAG 132 L+G+P KD + G+ TT P + H +V RL AGAIV GKTN+ + G Sbjct: 68 LYGVPFAAKDNIDVAGIRTTAACPEFAYIAEQHAT-VVQRLLDAGAIVIGKTNLDQFATG 126 Query: 133 ANSRNTVWGATGNPFNPLLNAGGSSGGSAAALAADLLPLCSGSDTGGSLRIPAAKCGVVG 192 + +GA N F+P +GGSS GSA+ +A L+P G+DT GS R+PA +VG Sbjct: 127 LVGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPAGLNNIVG 186 Query: 193 LRPSP------GLVPSQRKPLGWTPISVVGPMGRDVADTVLQLRATIGLHDSDPLSYPVS 246 L+P+ G+VP+ R + V VAD L G +D S Sbjct: 187 LKPTVGSLSGRGVVPACRT------LDCVSIFATTVADAELVFTQAAGFDAADAYSRARP 240 Query: 247 ASEFATLPPVDLSQLRIGY---TEDFGVCDVDDGIRQVFRNKIAAISRFV-QVCEPVQVD 302 LP ++ R G E +G D I + R VC P+ Sbjct: 241 EHVLNKLP----AKPRFGIPAQPEFYG-----DTIAAAAYAQALEAVRASGAVCIPLDFS 291 Query: 303 MGEAHRA--FDVIRAEAFVAGFEAAYRRDPASLGPNTRANYEMGAAMSLQDCAWAQGEQT 360 + + A +D A EA + ++ P R S D AQ + Sbjct: 292 LFDQVTALLYDGPWVAERYAAIEAFAKEHGDAIHPVVRDIIFRAREFSATDTFNAQYKLA 351 Query: 361 RIFRRFQQLYERYDLILSPTTPVSPFPWSELYLKEVNGVALENYYRWLALTYVVTLATNP 420 + R ++ D +L PT P + + +V + T V L Sbjct: 352 DLKRAADKIMASVDALLVPTAP------THYKIADVAADPVRRNSHMGKYTNFVNLLNWC 405 Query: 421 AISLPCGRDHRGMPFGLQVTGAFRRDARLLAW 452 A+++P G+PFGL + G D L A+ Sbjct: 406 ALAVPANLRSDGLPFGLTLIGPAWSDHALAAF 437 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,023,156 Number of extensions: 38416 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 4 Length of query: 506 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 419 Effective length of database: 899,382 Effective search space: 376841058 Effective search space used: 376841058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)