BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1167.p (408 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980910|ref|YP_001353544.1| major facilitator transporter [... 68 1e-12 gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 67 2e-12 gi|152982314|ref|YP_001355358.1| major facilitator transporter [... 65 5e-12 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 60 3e-10 >gi|152980910|ref|YP_001353544.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 436 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/410 (22%), Positives = 176/410 (42%), Gaps = 33/410 (8%) Query: 13 KYKYLVLVLLYLGWCVSYIDRAAITFAATQIASEFHLNPSDLGLLLSSFFLGYSLLQLPG 72 K +L L+L + +Y+DR + FA + ++ + + GL FF+GY L ++P Sbjct: 23 KVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGAGIFFIGYFLFEVPS 82 Query: 73 GWLADRYGSRPVIVVSILMWSIFTGVTGMAWSVTSLVVIRFVFGVGEGAFPAASIKGVAE 132 + + G+R I ++ WSI + T + T VIRF+ GV E F + + Sbjct: 83 NIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVAEAGFFPGIVLYLTY 142 Query: 133 NFAREERPKISSLLISSNYIGSMLAPLLIAPL---ILH--------FGWRNVFHTIGIAG 181 F R ++++L + IG +A ++ PL I++ GW+ +F + Sbjct: 143 WFPTSRRGRMNALFM----IGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQWLFLLEALPS 198 Query: 182 LVFALVYWF----CVRPVKPGLDGPKAINKA-------------AFAALLKMPLMWKIVA 224 L ++ F +R + KAI +A + A + P +W + A Sbjct: 199 LALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGDKSHSVAGVFTNPKVWLMAA 258 Query: 225 VWFGLSIINKGLDSWMPTYLMTVRGLNLKTVGLLLPLPYIMAGLSTAIGGWVMVRFFDGR 284 ++F + G+ ++PT + + VGLL +PY ++T + R + R Sbjct: 259 IYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVARSADRMRERR 318 Query: 285 EKLLLIASSLLTAVFVYCMYTASSVEGVIAWQCLAYFFKSFVLATCIALPTKLLQAQLVG 344 + ++ +F+ +Y + V ++A S + P+ +L Sbjct: 319 WHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLS-TMPVFWTYPSAILGGAAAA 377 Query: 345 SGVGMVNLGGQLAGFISPLVIGFLVSAFANYDYAFGFLISAALFSVVVSL 394 +G+G++N G LAGF+SP ++G+L + + F+ A + ++L Sbjct: 378 AGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGALVLGACLAL 427 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 13/198 (6%) Query: 13 KYKYLVLVLLYLGWCVSYIDRAAITFAATQIASEFHLNPSDLGLLLSSFFLGYSLLQLPG 72 +Y+ + ++ W +D +TF I +EF L + GLL SS FLG L Sbjct: 24 RYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAIA 83 Query: 73 GWLADRYGSRPVIVVSILMWSIFTGVTGMAWSVTSLVVIRFVFGVGEGAFPAASIKGVAE 132 G LAD++G +PV S++ W + G A VT L+V R V G G G + V+E Sbjct: 84 GMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMVSE 143 Query: 133 NFAREERPKISSLLISS---NYIGSMLAPLLIAPLILHFGWRNVFHTIGIAGLVFALVYW 189 + R K ++L +I + + L PLI GWR +F + I V+ Sbjct: 144 IVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLI---GWRGIFIALSIPA-----VFV 195 Query: 190 FCVRPVKPGLDGPKAINK 207 F VR P + P+ + + Sbjct: 196 FIVRRYVP--ESPRWLEE 211 >gi|152982314|ref|YP_001355358.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 402 Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 10/246 (4%) Query: 18 VLVLLYLGWCVSYIDRAAITFAATQIASEFHLNPSDLGLLLSSFFLGYSLLQLPGGWLAD 77 + V+L + ++ +DR + A+ + L+ +GL + F LG + +P G+L Sbjct: 10 MFVVLLFSYVINAMDRQLFSVLASDVRVALDLSVPQVGLASTVFTLGMGVAGIPTGYLLS 69 Query: 78 RYGSRPVIVVSILMWSIFTGVTGMAWSVTSLVVIRFVFGVGEGAFPAASIKGVAENFARE 137 R + V++V ++++S+ T +T ++ + L+ RFV G+GE A ++ + + Sbjct: 70 RMSRKNVVLVGLIIFSVATYLTALSTGMPDLLFYRFVSGLGE-AMQLTALLAIGTTYFFN 128 Query: 138 ERPKISSLLISSNYIGSMLAPLLIAPLILHFGWRNVFHTIGIAG---LVFALVY---WFC 191 R +S L + IG+++ P L A ++ W+ F G +G LV L++ WF Sbjct: 129 HRAVAASSLNFTFGIGAIIGPNLGAAILNSTHWQMPFMVFGASGALALVLILIFVKPWFT 188 Query: 192 -VRPVKPGLDGPKAINKAAFAALLKMPLMWKIVAVWFGLSIINKGLDSWMPTYLMTVRGL 250 ++ VK A AA + ++PL + V+ GL+I G PTYL G Sbjct: 189 EIKSVKQDGAAEAADANAADSVWSRVPLTLALATVFAGLAIY--GYLGLYPTYLREALGF 246 Query: 251 NLKTVG 256 K G Sbjct: 247 TPKQAG 252 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 81/162 (50%) Query: 13 KYKYLVLVLLYLGWCVSYIDRAAITFAATQIASEFHLNPSDLGLLLSSFFLGYSLLQLPG 72 Y + +++ L + +D A + + I +EF L + G+L S+ F+G +L + Sbjct: 24 NYHRFLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSS 83 Query: 73 GWLADRYGSRPVIVVSILMWSIFTGVTGMAWSVTSLVVIRFVFGVGEGAFPAASIKGVAE 132 G LAD++G +P+ +S+++W + + + A SL + R + G+G G + ++E Sbjct: 84 GMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTLLSE 143 Query: 133 NFAREERPKISSLLISSNYIGSMLAPLLIAPLILHFGWRNVF 174 + R K +L+ + I + A L+ ++ + WR +F Sbjct: 144 FIPAKRRGKYLALMDGNWPIAFICAGLMSYYVLASYSWRTMF 185 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 847,509 Number of extensions: 33490 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 11 Length of query: 408 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 323 Effective length of database: 906,776 Effective search space: 292888648 Effective search space used: 292888648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)