BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1166.p
         (205 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982014|ref|YP_001354625.1| TetR/AcrR family transcriptiona...    63   2e-11

>gi|152982014|ref|YP_001354625.1| TetR/AcrR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 213

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 7   KTRAILLDAALAAFARRGVRATTLEHVAASADFTRGAVYWHFPDKTALVKAVFEELVWPF 66
           +TR  +LDAA   F  RG+  ++L  VA +AD TRGA+YWHF +K+ L +A+ E +  P 
Sbjct: 11  ETRNRILDAAEEVFFTRGLAQSSLADVAVAADVTRGAIYWHFKNKSDLFEAMCERVRLPM 70

Query: 67  DLGPDLAVYRQSEQPMLLLREVLWLKML-DCLRDVRQRRRMEVVLRYRGTPELPEELAAR 125
           +        +    P+  LR   W+ +L D + + R RR ++++       +  + +  R
Sbjct: 71  ETMMTTPGEKFVRDPLGHLRHT-WIWLLRDVVDNPRSRRVLDIIFLKCELVDHNDPIWVR 129

Query: 126 LDTLSLQALDHLTAVLNIAYERGELRRGLTPIDVARCLVAACMGVIAEHMEDPQA 180
                 + L+++ ++L  A   G+L   L        L ++ +G++ + +  P +
Sbjct: 130 QRECHREGLENMRSILEEAVAMGQLPADLDTQLAVLSLHSSLVGLLTDWLFSPDS 184


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 429,790
Number of extensions: 16147
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 126
Effective length of database: 928,958
Effective search space: 117048708
Effective search space used: 117048708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)