BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1165.p (503 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 434 e-123 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 408 e-115 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 195 6e-51 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 195 7e-51 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 160 2e-40 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 238/465 (51%), Positives = 319/465 (68%), Gaps = 6/465 (1%) Query: 24 LPLLLAVLLGGCTLMPDYHRPDAPVAARFAGDNSAPAAQSAAVADIGWRDVFTDPALQQV 83 L LL A +L C++ P Y RPDAPVAA + + A Q AV DIGWR+ FTDP LQ + Sbjct: 6 LALLAAGVLSACSMAPKYVRPDAPVAADYGVPSKADNNQVRAV-DIGWRNFFTDPRLQVL 64 Query: 84 IAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPADLSTTGSALTA 143 I ++ANNRDLRVA L IE+ARA Y ++ A L PT+N + S +R PA +S TGS++ + Sbjct: 65 IGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVVS 124 Query: 144 RSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLASDQ 203 +Y LG +A+ELD FGRVRSL + AL ++LST EA+R+ QISL++EVA A+L+ S Sbjct: 125 SNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSFA 184 Query: 204 DRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYTAQVDQDRN 263 ++ LA+ T +S+ Y+L+++ E+G+SSAL LR + +++AR Q Q N Sbjct: 185 EQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQAMN 244 Query: 264 ALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQAERDLKAANA 323 AL LLVG+ L D LP P AL++ + L +P GLPS+LL +R DI AE+ L +ANA Sbjct: 245 ALTLLVGQPLTD--LP---PAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANA 299 Query: 324 NIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANRANLDIA 383 NIGAARAAF+P ISLTA GT+S LAGLF+GGS SWSF PQ+ LPIFD G NR NL++A Sbjct: 300 NIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLA 359 Query: 384 TISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYDLSQARFKSG 443 + +DI+VA YEK+IQ AFREVSDAL R+ L +Q+ AQ + EA + + RF++G Sbjct: 360 EVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNG 419 Query: 444 VDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGWVE 488 + S LDVLD+QR L++AQ +L+ RL+R TN V Y+ LGGG VE Sbjct: 420 IASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGLVE 464 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 221/465 (47%), Positives = 310/465 (66%), Gaps = 11/465 (2%) Query: 27 LLAVLLGGCTLMPDYHRPDAPVAA-----RFAGDNSAPAAQSAAVADIGWRDVFTDPALQ 81 +L+ +L GC+L P Y RPD PV+ R A + ++P ++I W++ F D L Sbjct: 17 VLSSILVGCSLAPVYERPDLPVSKTWPDQRLANERNSP---DVTASEIDWKEFFIDQNLS 73 Query: 82 QVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPADLSTTGSAL 141 QVI ++L NNRDLRVA LNI++ARA YGV+ A P++ TS + RTPADL+ G + Sbjct: 74 QVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLNDKGFSD 133 Query: 142 TARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTLAS 201 +YSA +G +++ELD FGR+++L + AL+ +++T EARRS QI+LI+EVA + LA+ Sbjct: 134 VTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRYQALAA 193 Query: 202 DQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYTAQVDQD 261 D +LA +TL ++ ++ Q +E G+SS L LRQ ++ +E+ARV + T Q D Sbjct: 194 DHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTRQRAVD 253 Query: 262 RNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQAERDLKAA 321 +NAL LLVG + +LLP G+ D A + LA +P GLPS+L+ R DI Q E L++ Sbjct: 254 QNALRLLVGATIDPSLLPSGMSD---ALPAMLADIPVGLPSDLISTRPDIRQHEAILRSE 310 Query: 322 NANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANRANLD 381 NA+IGAARAAF+P ISLT GT+S+ L+GLF+ GS SWSF+PQ+SLPIFD G NRANL+ Sbjct: 311 NASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVSLPIFDVGRNRANLN 370 Query: 382 IATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYDLSQARFK 441 +A RDI++A+YEK+IQ AFREV+DALA +TL +L A + A Y LS+ R++ Sbjct: 371 VAKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRASTAQERAERVRYVLSKQRYE 430 Query: 442 SGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGW 486 SG SYL+ LD+QRSL++ Q I T L+ N + YK LGGGW Sbjct: 431 SGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGW 475 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 195 bits (495), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 234/467 (50%), Gaps = 13/467 (2%) Query: 26 LLLAVLLGGCTLMPDYHRPDAPVAARFAGDNSAPAAQSAAVADIG-WRDVFTDPALQQVI 84 LL ++LGGC + PDY RPDAPVA + + A+ G W ++F D L + Sbjct: 12 LLALLILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELKGAWWEIFRDAELNALQ 71 Query: 85 AMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPAD-----LSTTGS 139 +L N + + +A +++ARAQ V ++ FP I A + +RT A+ ++ S Sbjct: 72 EQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSAERPLTNYNSQNS 131 Query: 140 ALTARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATAWLTL 199 ++ ++A S YELDLFGRVR E A + +T++ L AE+A +L L Sbjct: 132 SVVQNDFNAAFTVS-YELDLFGRVRRQAEGAGATAQQAQADFENTRLVLTAELAADYLVL 190 Query: 200 ASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYTAQVD 259 + + + TL +Q+ ELG++S L L Q Q + + + Q Sbjct: 191 RQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAATQTQLTLLQDQRA 250 Query: 260 QDRNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQAERDLK 319 + +NA+ LVG PD LP L T A A PL P+ LL+RR DI AER + Sbjct: 251 RYQNAIATLVGVPAPDFKLPVNLAVTT-APAIPLTA-----PAALLERRPDIAAAERAMA 304 Query: 320 AANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGGANRAN 379 AANA IG AR+A++PS+ L+ G+ + +L+ LF + WS + IFDGG AN Sbjct: 305 AANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIFDGGRTSAN 364 Query: 380 LDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYDLSQAR 439 +D A ++ Y +++ A +EV D L L + L + + +++ + LS R Sbjct: 365 VDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADRSLGLSTDR 424 Query: 440 FKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGW 486 ++SG+ + L+V+ +Q++ S + + R N V K LGGGW Sbjct: 425 YQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGW 471 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 195 bits (495), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 244/487 (50%), Gaps = 35/487 (7%) Query: 26 LLLAVLLGGCTL----------MPDYHRPDAPVAARFAGDNSAPAAQSAAVADIG-WRDV 74 ++ A++L GC+ +P+ +R + V A D + A A D G W V Sbjct: 11 MVAALVLAGCSTARPPEELKLDLPNAYREQSTVKANEL-DGAWKLAAPADNKDRGAWWKV 69 Query: 75 FTDPALQQVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESASRTPADL 134 F D L +I + +N +L +A+ ++ ARA GV A ++A + S Sbjct: 70 FGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRSGNAQGA 129 Query: 135 STTGSALTARSYSATLGFSAYELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVAT 194 ST Y A L F AYE+DLFGR+ A A RS ++L ++VA Sbjct: 130 ST--------QYRAPLSF-AYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQSDVAQ 180 Query: 195 AWLTLASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESY 254 + T+ S + + + T+ + LTQR + G +S L + Q +T + ++E Sbjct: 181 QYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAELEGV 240 Query: 255 TAQVDQDRNALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQA 314 Q Q +AL +L+GK + LP LAAA + T+P GLPS+LL+RR DI QA Sbjct: 241 KRQRAQRDHALAILLGKAPAEFTLPV----APLAAA--VVTVPSGLPSDLLERRPDIAQA 294 Query: 315 ERDLKAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQI----SLPI 370 +R L A++A IGAA+AAF+P + LT AG S L LFK S SW P + S+P+ Sbjct: 295 QRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTILSMPL 354 Query: 371 FDGGANRANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASG 430 FDGG N++NL A + + VA Y + F++V D L+ TL RQL +E V ++ Sbjct: 355 FDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNSAQ 414 Query: 431 AAYDLSQARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGWVERT 490 A L+ R++ G SY +V+D+QRS S+Q + I + R V + LGGGW Sbjct: 415 LASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGW---- 470 Query: 491 GTPVASD 497 PVA D Sbjct: 471 EAPVAKD 477 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 144/472 (30%), Positives = 233/472 (49%), Gaps = 37/472 (7%) Query: 29 AVLLGGC-------TLMPD----YHRPDAPVAARFAGDNSAPAAQSAAVADIGWRDVFTD 77 A+LL GC TL+P+ + +P A V A + +V W F Sbjct: 10 ALLLAGCATQATQQTLVPEVAPQWRQPQANV----------DATGTTSVLTRDWWRSFGS 59 Query: 78 PALQQVIAMSLANNRDLRVAVLNIEKARAQYGVERAALFPTINAATSESAS-RTPADLST 136 L ++ + D+ AV + +A+A + AAL P +N + + R D + Sbjct: 60 SELDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNG 119 Query: 137 TGSALTARSYSATLGFSA-YELDLFGRVRSLKEQALQSFLSTAEARRSTQISLIAEVATA 195 T T Y A G SA YELD +GR R++++ A + R + +++ A VA++ Sbjct: 120 TA---TGTVYQA--GLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASS 174 Query: 196 WLTLASDQDRLRLAKDTLQSQSATYQLTQRSVELGSSSALTLRQVQTSVESARVDVESYT 255 WL ++R+ +A ++ S + + G+++ L L Q Q V +A++ + Sbjct: 175 WLQTVGLRERVAIADLSVASAQRLLDVIESRARAGAANPLELAQ-QRGVLAAQMRARAAI 233 Query: 256 AQVDQDR-NALVLLVGKDLPDTLLPHGLPDTALAAASPLATLPPGLPSELLQRRADIVQA 314 Q +D L +L+G++ P L+ G L A + +A GLP++LL RR DI +A Sbjct: 234 RQQAEDSLTTLAVLLGRN-PSLLVLAGTELNKLQAPAVVA----GLPADLLVRRPDIARA 288 Query: 315 ERDLKAANANIGAARAAFYPSISLTADAGTASARLAGLFKGGSGSWSFVPQISLPIFDGG 374 E L A+ANI AARAA P ISL D S R++ +F + +S ++ PIF+ G Sbjct: 289 EAQLSGADANIIAARAAMLPRISLGGDITAGSNRVSSVFD--NPVYSLAAGLAAPIFNAG 346 Query: 375 ANRANLDIATISRDISVAQYEKAIQTAFREVSDALAQRNTLGRQLAAQESLVEASGAAYD 434 A D+A R+ +A Y +AI AF +V AL + Q AQE + + A++ Sbjct: 347 RLAAGRDLALAQREELLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFN 406 Query: 435 LSQARFKSGVDSYLDVLDSQRSLYSAQSNLIGTRLSRWTNLVTFYKVLGGGW 486 L+++R+++G ++ L +LD+QR+LY+AQ R R V+ YK LGGGW Sbjct: 407 LAESRYRAGAETSLTLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGW 458 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.128 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 876,776 Number of extensions: 29471 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 15 Length of query: 503 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 416 Effective length of database: 899,382 Effective search space: 374142912 Effective search space used: 374142912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)