BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1163.p (396 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 318 4e-88 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 140 2e-34 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 138 5e-34 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 101 6e-23 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 83 2e-17 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 318 bits (815), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 175/375 (46%), Positives = 246/375 (65%), Gaps = 9/375 (2%) Query: 6 ILRPVAAVAILSVLSACGKPP---GGPPPAAGTPVLGVVTVRTQPVELHTELPGRTSPYQ 62 + R AA+ ++ ++ CG PPP + VVTV+ + + ELPGR + Sbjct: 7 LTRLSAALFLIYAIAGCGAKSDQAAAPPPQE----VSVVTVQPGVLGVTNELPGRMESIR 62 Query: 63 IADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASYRAAYDSSVAALAKAEASVKTARL 122 +A+VR +V GI+ R FREGSDVKAG +LYQIDPA +A Y+S+ AA+A+ EA++ TA Sbjct: 63 VAEVRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQ 122 Query: 123 KAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARVDAPISGRI 182 KA+RYK LV AVS+Q+YDD A+ +A AD+ SA+A + +R++L YA V +PISGRI Sbjct: 123 KAKRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRI 182 Query: 183 SKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLDLKEALAKGQLQKSGNG-AK 241 ++ VT GALV T L +QQ+DPIYV++TQS+ L LK A+ +G+L+ +G G AK Sbjct: 183 GRALVTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAAK 242 Query: 242 VRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFPNPKADLLPGMYVRAVLEEGVRQ 301 V L+ ++G+ Y G+L FSD+TV++ +G++TLRA PNP LLPGMYVRA +E+ V + Sbjct: 243 VTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDE 302 Query: 302 QGLLVPQQAVSRDGAGKPQAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQLVVDG 361 + VPQQAV R G VV A G V R + T + G W+++ GLKEGDQ++V+G Sbjct: 303 NAITVPQQAVLRTPGGS-AVMVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIVEG 361 Query: 362 QQQATPGAKVKVVPW 376 Q+ PGA VK V W Sbjct: 362 LQKVQPGATVKPVQW 376 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 167/337 (49%), Gaps = 9/337 (2%) Query: 44 RTQPVELHTELPGRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASYRAAY 103 R Q + + G + A VR QV G+++ +F+EG V+AGQ+L QIDP +++A Sbjct: 77 RRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDPRAFQATL 136 Query: 104 DSSVAALAKAEASVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQ 163 + LA+ +A + AR+ RYK+L++ A+ +Q D A + + E V S + V Sbjct: 137 GQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTVKSDQGTVD 196 Query: 164 TSRINLDYARVDAPISGRISKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSSTNWLD 223 ++++ L Y RV API+GR+ G +V + T + I Q PI + + S N Sbjct: 197 SAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIITQTRPIALVFSVPSANVPA 256 Query: 224 LKEALAKGQLQKSGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFPNPKA 283 + L ++ V G+T G++ D ++ T I ++A+FPN Sbjct: 257 ITARL------RANETVAVEAWDRTGKTKLATGQVATVDNAIDVTTDTIKVKALFPNLDD 310 Query: 284 DLLPGMYVRAVLEEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQGVVEQRALVTDRAIGD 343 L P V V++ + + L VPQ AV R G +VVNA V R +V AI Sbjct: 311 ALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGF-YVYVVNADSTVSTR-VVKPGAIDS 368 Query: 344 QWL-VSSGLKEGDQLVVDGQQQATPGAKVKVVPWSPK 379 W+ + + L+ G+++V+DG + G KV+V+ PK Sbjct: 369 GWMAIEAKLEAGEKVVIDGTDRLREGGKVEVIAADPK 405 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 138 bits (348), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 167/321 (52%), Gaps = 6/321 (1%) Query: 53 ELPGRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASYRAAYDSSVAALAK 112 + GR + ++RP++ G I + F++G VK G +L+ IDP Y+A + AA A Sbjct: 63 DFSGRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAG 122 Query: 113 AEASVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYA 172 A+A + A+ + +R K L+ +AV+Q++ D ++ EA+A++ + A V T+R+NL Y Sbjct: 123 AQARLALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQYT 182 Query: 173 RVDAPISGRISKSSVTPGALVTASQTT-ALTTIQQLDPIYVDVTQSSTNWLDLKEALAKG 231 + AP+SGR+S++ +T G LV T LTT+ + P+YV+ ++ G Sbjct: 183 EITAPVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNFEIDEPTYIRYA---GNG 239 Query: 232 QLQKSG-NGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFPNPKADLLPGMY 290 + SG + V + L + Y G ++ D ++ +G I +RAVF N L PGMY Sbjct: 240 TVGNSGVSKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGMY 299 Query: 291 VRAVLEEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQGVVEQRALVTDRAIGDQWLVSSG 350 R + + LL+ +AV D K VV+A V R + + +V SG Sbjct: 300 ARVRTGDANAKNALLIDDKAVGTD-QDKKYVMVVSADNKVTYRPVSLGPIVDGLRIVRSG 358 Query: 351 LKEGDQLVVDGQQQATPGAKV 371 L++ +++VV+G Q+ P V Sbjct: 359 LQKDERIVVNGLQRIRPNDTV 379 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 162/345 (46%), Gaps = 18/345 (5%) Query: 40 VVTVRTQPVELHTELPGRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQIDPASY 99 + T +T P+ ++ G + DVRP+V I+++ +EG VKAGQ+L+ +D S Sbjct: 45 IATQKTIPITVNAN--GYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDERSD 102 Query: 100 RAAYDSSVAALAKAEASVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEADVGSAR 159 ++ + A LA A+A + A +R ++L+A VSQ D A + + + Sbjct: 103 QSNVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRANQ 162 Query: 160 ANVQTSRINLDYARVDAPISGRISKSSVTPGALVTASQTTALTTIQQLDPIYVDVTQSST 219 A +Q+S + L ++ A ISGRI +V PG+L + T + TI Q+DPI + T Sbjct: 163 AAIQSSSVALSDNQIKAGISGRIGVINVHPGSLAQPT-GTVMVTIVQIDPIMISFTLPER 221 Query: 220 NWLDLKEALAKGQLQKSGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGAITLRAVFP 279 +++ +G A V L G+L F D + +G I ++A F Sbjct: 222 ELANIRATYPQGN-------APVHAQLPGQEVLT--GKLTFIDNLADTQSGTIRMKAEFA 272 Query: 280 NPKADLLPGMYVRAVLEEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQGVVEQRALVTDR 339 N + L PG Y+ + +LVP QAV G +VV V++ + Sbjct: 273 NAEQKLWPGSYINVSMVSREVPDAVLVPAQAVV-TGPVDKLVYVVQPDDTVKEEKISVLA 331 Query: 340 AIGDQWLVSSGLKEGDQLVVDGQQQATPGAKV----KVVPWSPKA 380 G Q V SG+K G ++VV+G + PG K+ K VP +P A Sbjct: 332 IEGGQAAV-SGVKAGSRVVVEGTKNLRPGTKIREVKKEVPATPVA 375 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 153/344 (44%), Gaps = 19/344 (5%) Query: 35 TPVLGVVTVRTQPVELHTELPGRTSPYQIADVRPQVGGIIKSRSFREGSDVKAGQMLYQI 94 T + V + R+ + LPG A + + G + G VK G +L I Sbjct: 70 TRYVSVTSPRSSATDNVLRLPGTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVI 129 Query: 95 DPASYRAAYDSSVAALAKAEASVKTARLKAQRYKELVAIKAVSQQDYDDAVASLGEAEAD 154 D + + A A+A +++ A+ +R+ L AVSQQD D+ +L A A Sbjct: 130 DTPEVAQQLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAA 189 Query: 155 VGSARANVQTSRINLDYARVDAPISGRISKSSVTPGALV-TASQTTALTTIQQLDP--IY 211 S++A VQ + L Y+R+ AP G +++ ++ G LV + T L T+ + DP +Y Sbjct: 190 DNSSKATVQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVY 249 Query: 212 VDVTQSSTNWLDLKEALAKGQLQKSGNGAKVRLILENGRTYAEEGRLQFSDVTVNQDTGA 271 V V QS + + K+GN + L G+ + +G++ + ++ T Sbjct: 250 VYVPQSYSTQI------------KAGNTVGITLNEIPGKVF--DGKIARTAGAIDTVTRT 295 Query: 272 ITLRAVFPNPKADLLPGMYVR-AVLEEGVRQQGLLVPQQAVSRDGAGKPQAFVVNAQGVV 330 + + PNP LLPG Y + A+ G L +P + G P+ VV G V Sbjct: 296 LQVAIDLPNPDGVLLPGAYAQVAIKASGGSASSLTIPNNTLLFRPEG-PRVAVVGDDGKV 354 Query: 331 EQRALVTDRAIGDQWLVSSGLKEGDQLVVDGQQQATPGAKVKVV 374 + +V R +G ++SG+ D+L+++ + G V V+ Sbjct: 355 RLQPVVIARELGVDIELASGVTAQDKLIINPADSLSNGDAVSVI 398 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.128 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 763,992 Number of extensions: 30354 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 14 Length of query: 396 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 311 Effective length of database: 906,776 Effective search space: 282007336 Effective search space used: 282007336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)