BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1156.p
         (349 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase [...   191   4e-50

>gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase
           [Janthinobacterium sp. Marseille]
          Length = 336

 Score =  191 bits (486), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 170/315 (53%), Gaps = 3/315 (0%)

Query: 26  LAVRLSAAGHQVSVLARGQTLQAIREHG--LTLHDLHGRTHARPTASE-LPEFGEQDVIF 82
           + V+L+ AG  V+ + RG  L+AIR++G  L +HD      A   A+    E G QD+I 
Sbjct: 15  VGVKLALAGEDVTFIVRGANLEAIRKNGAKLIMHDGSEHVAANVKATNNYDEAGPQDIIV 74

Query: 83  LCAKSQDMSALLSQIAPLVGAQTVVIPTNNGVPWWYFHREGGRFDGQTVKAVDPDGALSR 142
           L  K+  + A+   +  L+G +TV++   NG+P+WYFH+ GG+  G  V++VDP G ++ 
Sbjct: 75  LAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLTGTRVESVDPTGKITA 134

Query: 143 AVPLAQLIGSVLFITAEVERPGVIRSVNPHLMVLGEPSGEMSERLLRVRAAVEAAGIEAR 202
            +P  +++G V++  +E+  PGVI+ +      +GE  G  SER  RV      AG ++ 
Sbjct: 135 KIPADRVLGCVVYPASELIAPGVIKHIEGDRFPIGELDGSTSERATRVSECFTNAGFKSP 194

Query: 203 ATDRIRDKLWTKIIANISTNPLSVITRGTLEQLYGQPELREVVSQIMRETLLVASSYGAR 262
             D IR ++W K+  N++ NP+S ++  TL+ +   P  RE+ + +M E   +A   G  
Sbjct: 195 VLDNIRSEIWLKLWGNLTFNPISALSHSTLQDICQYPLSRELAAAMMTEAQTIAHKLGIE 254

Query: 263 VDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELAAIGDAVLEMAERFAIPMPITRAVVS 322
             +     +   E +G  +TSMLQD+E GR  E+ A+  +V E+      P P    V +
Sbjct: 255 FRVTLEKRIAGAEKVGKHKTSMLQDVEAGRDPEIDALVGSVAELGRLTETPTPHIDTVYA 314

Query: 323 LARFRGETARQQTDQ 337
           L +   +T  ++T Q
Sbjct: 315 LVKLLAKTMNEETGQ 329


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 680,260
Number of extensions: 25797
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 265
Effective length of database: 910,473
Effective search space: 241275345
Effective search space used: 241275345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)