BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1155.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 220 5e-59 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 204 5e-54 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 200 6e-53 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 168 2e-43 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 168 2e-43 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 220 bits (561), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 113/241 (46%), Positives = 166/241 (68%), Gaps = 5/241 (2%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPS--- 57 M + VL++ L AYG ++ + G++L V +G ++T+IG NGAGKTT L AI G LP+ Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 58 RGAMAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAA 117 G + + G E+V + +VPE R +F M+I++NL++GAF R + AA Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR--DDKDGIAA 118 Query: 118 TLEEVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVRE 177 +++ + +FPRL+ER +Q AGTLSGGE+QMLA+ RALM+ P LL+LDEPS+GL+P++V + Sbjct: 119 DIDKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEK 178 Query: 178 IFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYL 237 IF +I + +G++ILLVEQNA+ ALQ A+ YV+E+G + MHG A Q+ D +V EAYL Sbjct: 179 IFEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYL 238 Query: 238 G 238 G Sbjct: 239 G 239 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 204 bits (518), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 161/239 (67%), Gaps = 5/239 (2%) Query: 2 GNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLP-SRGA 60 G+ +L++ E++ YG ++ I+L V +G IVT+IG NGAGK+T L AI G+ P + G+ Sbjct: 13 GSNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGS 72 Query: 61 MAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQ-RDHAATL 119 + +G + E++ G++ PE R +F ++ + +N+ +GA++R + RD + Sbjct: 73 IRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDD---M 129 Query: 120 EEVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIF 179 E ++ FPRLRER Q AGTLSGGE+QMLA+ RALM++PRL+M DEPSLGLAP IV +IF Sbjct: 130 ERMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIF 189 Query: 180 RIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLG 238 +I E+R G ++L+VEQNA AAL + D GY+LENG I G ++++ + + AYLG Sbjct: 190 SLIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 200 bits (509), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 154/235 (65%), Gaps = 5/235 (2%) Query: 6 LEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSR-GAMAFD 64 L V+ L+ Y V VL +++ V G+I ++G NGAGK+TL+ +I+G+ P R G + + Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 65 GVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQ-RDHAATLEEVY 123 G + ++A+G++ +PE R++F M + +NL LGAF S RD L VY Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDR---LARVY 120 Query: 124 TLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 +FPRL+ER +Q AGT+SGGE+ M+++GR LMA+P+LL++DEPSLGL+PL V+E F++I Sbjct: 121 EIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIK 180 Query: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLG 238 ++ G+++LLVEQNAR L ++ YGYVL G + G A L+ + V AY G Sbjct: 181 QINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 168 bits (426), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 149/228 (65%), Gaps = 7/228 (3%) Query: 5 VLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLP-SRGAMAF 63 +L+V +L+ YG L GI+LSVE+G+ ++++G NG GKTTLL +MGVLP + G ++ Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 64 DGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAATLE-EV 122 DG + + A G+ VP+ RE+FA + +E+NL++G +SG++ A+ ++ EV Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMG--MATKSGKK--ASVIKGEV 116 Query: 123 YTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRII 182 Y LFP L+E + G LSGG++Q LA+ RAL+A+P+L++LDEP+ G+ P I+++I R+I Sbjct: 117 YELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVI 176 Query: 183 AELRRRG-VSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHD 229 + LR RG + ILL EQ A ++AD VL GE+ G ++ D Sbjct: 177 SLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDD 224 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 168 bits (426), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 143/237 (60%), Gaps = 7/237 (2%) Query: 3 NKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSRGAMA 62 + +LE++ L A YG VL GI+++++ G IV+++G NGAG++T + A MG++ + G + Sbjct: 2 SALLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATGTIR 61 Query: 63 FDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAATLEEV 122 F G + G+ V E RE+F +++ NL+LGA + R D + Sbjct: 62 FKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSRWSADD-------M 114 Query: 123 YTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRII 182 Y LFPRL+ER+ AG LSGGE+QMLA+ R LM P L+M+DEP+ GLAP +V + + Sbjct: 115 YRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFL 174 Query: 183 AELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLGL 239 EL +RGVS+LL+EQ AL+++ YV+ +G++ G L D V + +LG+ Sbjct: 175 QELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 581,360 Number of extensions: 24000 Number of successful extensions: 288 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 59 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)