BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1154.p (630 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 223 4e-59 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 218 1e-57 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 162 6e-41 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 150 2e-37 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 147 1e-36 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 223 bits (567), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 167/250 (66%), Gaps = 2/250 (0%) Query: 357 EVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSV 416 +++L++ V+++FGGL A +++++K+M G++ LIGPNGAGK+T FN I+G+ +GS Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 417 QFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASML--RL 474 + G + +A G++R+FQ++RL MT LENV IG ++R +G+ ++ + Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKA 123 Query: 475 DRKEEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAA 534 R+EEA I A +E VG+ A LS G QR LEIARALA DP LL LDEPAA Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 535 GLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQN 594 G+ EK L ELL K++ EG ILL+EHD+ +M L DRI V+D+G+ IAEG+PA++Q Sbjct: 184 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQK 243 Query: 595 NRAVLEAYLG 604 + AV+EAYLG Sbjct: 244 DPAVIEAYLG 253 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/247 (46%), Positives = 163/247 (65%), Gaps = 2/247 (0%) Query: 360 LDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFR 419 L+++ VT + GL A +N S V AG++++LIGPNGAGK+T +N ISG PTSG V+ Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 420 GHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD--RK 477 GH++TG I+ LG+ RSFQ + TV EN+ +L+GQ GVL ++LR R+ Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 478 EEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLR 537 EEA + +A + +GL A+ LA LS G+QR+L + ALAA P +LLLDEPAAGL Sbjct: 130 EEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLN 189 Query: 538 LGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQNNRA 597 E +A E++R++ G+ +LLVEHDM VM + D IVV+++G+ IA G P+EIQN+ Sbjct: 190 PSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDPE 249 Query: 598 VLEAYLG 604 V+ AYLG Sbjct: 250 VIRAYLG 256 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 162 bits (410), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 156/252 (61%), Gaps = 6/252 (2%) Query: 362 VRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGH 421 V +T +FGGL A + +++++ GEVL L+GPNG+GK+T FN ++G+ TSGS+ ++G Sbjct: 23 VTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIYKGQ 82 Query: 422 EVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD--RKEE 479 EV G+ + I G++R+FQ RL +TV +N+ IG Y G+ ++ + R E Sbjct: 83 EVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAFRAEY 142 Query: 480 ARILA--EAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLR 537 + EA I L A+M+E G ++ +R +E+ RAL + P LLLLDEP+AG+ Sbjct: 143 DAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPSAGMT 202 Query: 538 LGEKQALAELLRKLRG--EGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQNN 595 E +AL + + ++RG E + I+L+EH+M+ + + DR +V ++G+KIAEG AEI + Sbjct: 203 HDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAEITAD 262 Query: 596 RAVLEAYLGVAD 607 V AYLG A+ Sbjct: 263 PNVQTAYLGEAE 274 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 140/252 (55%), Gaps = 6/252 (2%) Query: 357 EVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSV 416 ++ L++R V ++FG SL++ G+ LALIGPNGAGKSTLFN ISG +SG + Sbjct: 3 QLALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDI 62 Query: 417 QFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGA-YLRGQRGVLASMLRLD 475 G + G+ I G+SRSFQ + R++V EN+ + G R + RL+ Sbjct: 63 LLNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYR--YSFWQRLN 120 Query: 476 RKEEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAG 535 ++ AE +E +GL + A LS +QR LEI +A +LLLDEP AG Sbjct: 121 GLQDVNQRAEQV--MEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAG 178 Query: 536 LRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPAEIQNN 595 + E A EL+RK+ G +L+VEHDMD V L DRI V+ +G+ IA P I+NN Sbjct: 179 MSRSESDAAVELIRKISA-GKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNN 237 Query: 596 RAVLEAYLGVAD 607 V +AYLG + Sbjct: 238 PLVQQAYLGTVE 249 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 144/255 (56%), Gaps = 9/255 (3%) Query: 354 APHEVVLDVRAVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTS 413 + ++V+L ++R +G +A +N+ L V GE ++++GPNGAGK+TL N ++G+ PT+ Sbjct: 2 STNDVLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 414 GSVQFRGHEVTGRGARHIAGLGMSRSFQHVRLMPRMTVLENVAIGA--YLRGQRGVLASM 471 G V F G + G GA +A G++R+FQ + P +TV E +A+ A YL QR Sbjct: 62 GHVNFDGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLN-QRWNGFGH 120 Query: 472 LRLDRKEEARILAEAARQIERVGLGAQMYELAGALSLGQQRILEIARALAADPCLLLLDE 531 L RK I R + GL + G+L G++++L++A A A P ++LLDE Sbjct: 121 LFGSRK----INDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDE 176 Query: 532 PAAGLRLGEKQALAE-LLRKLRGEGM-AILLVEHDMDFVMELVDRIVVMDFGQKIAEGLP 589 P AG+ +K + E LLR + G+ AI+LVEHDMD V RIV M G+KIA+ Sbjct: 177 PTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIADLPR 236 Query: 590 AEIQNNRAVLEAYLG 604 E N V+ +G Sbjct: 237 DEFFANEEVVSIVVG 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,265,689 Number of extensions: 51575 Number of successful extensions: 468 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 371 Number of HSP's successfully gapped: 71 Length of query: 630 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 541 Effective length of database: 891,988 Effective search space: 482565508 Effective search space used: 482565508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)