BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1153.p
         (344 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans...    73   2e-14
gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t...    63   3e-11
gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC t...    60   3e-10

>gi|152980464|ref|YP_001352469.1| branched-chain amino acid
           transport system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 290

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 93/166 (56%), Gaps = 1/166 (0%)

Query: 179 APFTEAALEVGGLRLSSQALWVIGVSLLLIVALFLMFERTLYGKALRAAALNRMGARLMG 238
           +PF++  +  G + +S   L+V+  +L L+V  +L+ ER+  G A+RA   ++  A+++G
Sbjct: 123 SPFSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAKIVG 182

Query: 239 ISPVFAGKAMFLLASLIGVMSGILIAPITTIYYDSGFLISLKGFVGSIIGGLVSYPLAAA 298
           ++        F L S +  ++G L+AP+  +    G L SLK F   I+GGL + P AA 
Sbjct: 183 VNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPGAAL 242

Query: 299 GALAIGLIESFST-FWASAYKEIIVFVLIIPILLWRSLSTHHVEEE 343
           G   + ++E F   + ++AY++ + F++I+ ++++R      + E 
Sbjct: 243 GGFILAIVEEFGAGYISTAYRDALGFLVILAVMIFRPQGLFTIRER 288


>gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC
           transporter permease [Janthinobacterium sp. Marseille]
          Length = 293

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 82/170 (48%)

Query: 173 PEGARTAPFTEAALEVGGLRLSSQALWVIGVSLLLIVALFLMFERTLYGKALRAAALNRM 232
           P+       T   +   G+ + +  + VI V++ L + +     +T  GK LRA A NR 
Sbjct: 123 PQQLPNVSMTFGTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRE 182

Query: 233 GARLMGISPVFAGKAMFLLASLIGVMSGILIAPITTIYYDSGFLISLKGFVGSIIGGLVS 292
            +  MGI+       +F L +++G + G L+ P      + G  + ++ F   +IGGL S
Sbjct: 183 TSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGS 242

Query: 293 YPLAAAGALAIGLIESFSTFWASAYKEIIVFVLIIPILLWRSLSTHHVEE 342
              AA GAL +GLI + S  +    + + ++ +++ +L+W+    +   E
Sbjct: 243 MKGAAVGALIVGLIRALSAMYYPEAEILAIYAIVLAVLIWKPAGLYGKAE 292


>gi|152981508|ref|YP_001352347.1| branched chain amino acid ABC
           transporter permease [Janthinobacterium sp. Marseille]
          Length = 309

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 26/210 (12%)

Query: 143 PIASASPLVLLIVSIAVHVALVGVALLVFGPEGARTAPFTE----AALEVGGLRLSSQAL 198
           P+  A PL  L+ ++ +   +   ++ +F P+G+ + PF       ++++G L L +  +
Sbjct: 94  PLHKAPPLNTLLATLMLGTVMR-ESVRLFYPDGSNSKPFPSLLPTGSVDIGTLALRADNV 152

Query: 199 WVIGVSLLLIVALFLMFERTLYGKALRAAALNRMGARLMGIS------PVFA-GKAMFLL 251
            ++   L +I  +  +  RT  G A+RA A +   ARLMGI+        FA G  M   
Sbjct: 153 ILLISGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGINFEAVVLLTFALGSGM--- 209

Query: 252 ASLIGVMSGILIAPITTIYYDSGFLISLKGFVGSIIGGLVS--------YPLAAAGALAI 303
           A+L GVM+G+       I ++ G L+ + GF  +I+GGL +        +  AA   L  
Sbjct: 210 AALAGVMNGLY---YNEINFNVGLLLGVIGFSAAILGGLGNIYGAILGGFLFAALQVLGS 266

Query: 304 GLIESFSTFWASAYKEIIVFVLIIPILLWR 333
            L+ +      SAYK++  F ++I ++ W+
Sbjct: 267 ALLPALIPNIPSAYKDVFAFAVVIILMAWK 296


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 644,298
Number of extensions: 22386
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 260
Effective length of database: 910,473
Effective search space: 236722980
Effective search space used: 236722980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)