BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1151.p (247 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 139 2e-34 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 123 1e-29 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 116 1e-27 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 114 6e-27 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 110 7e-26 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 5/243 (2%) Query: 4 KIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSAVAASLDASGATAMPLALDVRR 63 ++ALVTGA+RG+G +IA+++ G KV + +A++ L G + LDV Sbjct: 9 QVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGK---GVVLDVND 65 Query: 64 KPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVFG 123 +A D I+ +G ++LVNNAG ++ M + EEWD V A N+ + Sbjct: 66 AARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVL 125 Query: 124 KRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAISP 183 + + GRIIN+ S+ G +G A +YAAAK V +++ ARE+ +TVN I+P Sbjct: 126 RGMMKAKTGRIINITSVVGSSG-NAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAP 184 Query: 184 GPLDLPIVREIVPADKLAATIATIPVKTLGAPDFIADAVLLLASPDAGSATGACLDINGG 243 G +D + + + ++AA + +P+ LG P+ IA AV LASP A TG L +NGG Sbjct: 185 GFIDTDMTKTL-SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNGG 243 Query: 244 LYM 246 +YM Sbjct: 244 MYM 246 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 4 KIALVTGAARGLGESIARKMHAAGYKVALS-DIDLEQVSAVAASLDASGATAMPLALDVR 62 ++ALVTG GLGE+I K+ A GY+V + ++ + SG DV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 63 RKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQVF 122 IE G VLVNNAG +R ++ +WD V A N+ F + Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 123 GKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVNAIS 182 ERG+GRIIN++S+ GQ G +Y+AAK + TK A E+A VTVN IS Sbjct: 123 CDGMVERGWGRIINISSVNGQKGAFGQ-TNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 183 PGPLDLPIVREIVPADKLAATIA-TIPVKTLGAPDFIADAVLLLASPDAGSATGACLDIN 241 PG + +V I P D L I IP+ LG P+ IA V LAS +A TGA + IN Sbjct: 182 PGYIGTKMVMAI-PQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAIN 240 Query: 242 GGLYM 246 GG +M Sbjct: 241 GGQHM 245 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 20/251 (7%) Query: 3 KKIALVTGAARGLGESIARKMHAAGYKVALSDID-LEQVSAVAASLDASGATAMPLALDV 61 KK+A++TGA+RG+G +IA ++ G+ V ++ + A+ A L A+ A+ + DV Sbjct: 6 KKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADV 65 Query: 62 RRKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQV 121 D D E + G VL+NNAG ++A+L E + E ++ +IN++GTF + Sbjct: 66 ANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTFNTLRE 125 Query: 122 FGKRFAERGYGRIINVAS----LAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVT 177 R + GR++N +S ++ N TG +K AV LT +FA+E+ G +T Sbjct: 126 AATRLND--GGRVVNFSSTTVAMSLPNYSVYTG-----SKAAVEVLTPIFAKEMRGRNIT 178 Query: 178 VNAISPGPLDLPIVREIVPADKLAATIATI----PVKTLGAPDFIADAVLLLASPDAGSA 233 VNA++PG P+ ++ K A I + P++ LG PD IA AV L D G Sbjct: 179 VNAVAPG----PVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWI 234 Query: 234 TGACLDINGGL 244 G L NGGL Sbjct: 235 NGQVLRANGGL 245 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 114 bits (285), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MDKKIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSAVAASLDASGATAMPLALD 60 M+ L+TGA G+G + A GY+VA+S E +A+AA L A G A L D Sbjct: 30 MNTPTVLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLAD 89 Query: 61 VRRKPDFIAACDAIELRWGGATVLVNNAG-RSRVAALMEITPEEWDEVTAINMKGTFLAC 119 VR + D + +R+G V VNNAG ++A ++E + + E +N+ GT L+ Sbjct: 90 VRFEADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSL 149 Query: 120 QVFGKRFAERGYGRIINVASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVN 179 + + +G G IIN++S+AG+ G A + Y A+K AV LTK A E A +GV VN Sbjct: 150 KHEMRVMLAQGSGSIINLSSVAGKV-GIAGASVYVASKHAVEGLTKSAALEGAAAGVRVN 208 Query: 180 AISPGPLDLPIVREIV--PADKLAATIATIPVKTLGAPDFIADAVLLLASPDAGSATGAC 237 A++PGP+ ++ V + A +ATIP PD IA ++ LAS TG Sbjct: 209 AVAPGPVATEMLDRFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQS 268 Query: 238 LDINGG 243 + ++GG Sbjct: 269 IAVDGG 274 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 110 bits (276), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MDKKIALVTGAARGLGESIARKMHAAGYKVALSDIDLEQVSAVAASLDASGATAMPLALD 60 K+A+VTG G+G+ +A ++ AG V + D ++ VA +D SG A D Sbjct: 4 FSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFHAGD 63 Query: 61 VRRKPDFIAACDAIELRWGGATVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTFLACQ 120 + + A D + +GG +L+NNAG R A +E+ E+D +KG F Q Sbjct: 64 IAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKGKFFMAQ 123 Query: 121 VFGKRFAERGYGRIINVASL-AGQNGGTATGAHYAAAKGAVLTLTKVFARELAGSGVTVN 179 K RG G I+ SL A Q G A Y+AA V LT+ A ELA S + +N Sbjct: 124 AAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNIRIN 183 Query: 180 AISPGPLDLPIVREIVPADKLAATI----ATIPVKTLGAPDFIADAVLLLASPDAGSATG 235 ++PG ++ P+ + D++ AT+ A P+ G P +A+A+L LAS +A TG Sbjct: 184 TVAPGVVETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASANASWITG 243 Query: 236 ACLDINGGL 244 L ++GG+ Sbjct: 244 TVLSVDGGV 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 546,103 Number of extensions: 21328 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 20 Length of query: 247 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 166 Effective length of database: 921,564 Effective search space: 152979624 Effective search space used: 152979624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)