BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1148.p (510 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 119 4e-28 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 93 3e-20 gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 64 2e-11 gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 57 3e-09 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 19/265 (7%) Query: 248 DITDQVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRLQ-- 305 DI+D+ E+ R+ + L+ AR MGE+A+ +AHEL+QPLAAI ++ G++ L+ Sbjct: 409 DISDRKRVEDLNRQQEEKLQASARLATMGEIASTLAHELNQPLAAISSYTTGALNMLERD 468 Query: 306 QSEALREQAGQIVWGLESAGRQVDHAAAIIKSVREYVVRLEQSEGLIDLNAVLQDVRWFI 365 +S+A + LE A Q A II+SV +V + E + + ++ +V + Sbjct: 469 KSKAAEVNIDMLTHALEKAQAQAQRAGQIIRSVHTFVKKREPMRTAVTIEELIDNVAPLV 528 Query: 366 EMKAAEGKVHLHF-LPCAEPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITT- 423 E++A + V + +P P V+ + VL+ QV+LNL NAIE M R +RI Sbjct: 529 ELQAQKYFVFIKIDIPDNLPAVL-ADHVLLEQVLLNLTRNAIESMQSIAPEKRVLRIAAA 587 Query: 424 --RRAGDHALLSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIW- 480 + ++S++D+G GI ERL+ FFS+K G G+GL++C+ I H G + Sbjct: 588 IDESDPPNVVVSISDQGHGIPPEVAERLYSPFFSTKADGMGMGLSICRTAIEFHGGTLTH 647 Query: 481 -AQPGEVSHETAAQARGTRFCFTLP 504 PG GT F F+LP Sbjct: 648 ADNPGG----------GTIFRFSLP 662 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 12/257 (4%) Query: 252 QVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRLQQSEALR 311 ++ A+E R + +L ++AR ++GE+ +I HE++QPL AI + + + L Q Sbjct: 337 RLRADEEANRQRTALAHVARLGSVGELTASIVHEINQPLGAILANADAATMMLNQQSHPD 396 Query: 312 EQAGQIVWGLESAGRQVDHAAAIIKSVREYVVRLEQSEGLIDLNAVLQDVRWFIEMKAAE 371 + I+ + + A+ II+ +R + + + LN V+ R + A + Sbjct: 397 HELRAILADIRDDNLR---ASLIIQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNLAIK 453 Query: 372 GKVHLHFLPCAEPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRA-GDHA 430 V + + ++ + + QV++NLA NA+E M P R + I T + H Sbjct: 454 HHVMMAIELAPDLPMIMGDSTHLQQVLINLASNAMEAMEAVPPAQRTLSIKTEQCNASHI 513 Query: 431 LLSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIWAQPGEVSHET 490 L VAD+G GI +F+ F+++K G G+GLA+ + I+ H G I E ++ Sbjct: 514 RLIVADKGPGIPTNILPNIFESFYTTKPEGMGMGLAIVQTIVDAHCGLI-----ETFNDP 568 Query: 491 AAQARGTRFCFTLPLAE 507 A G F T P+A+ Sbjct: 569 AG---GAAFVITFPIAK 582 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 30/253 (11%) Query: 242 HLLHFHDITDQVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSV 301 +++ F DI+D + A+ R A GE+A +AHE+ PL I+ L Sbjct: 509 YVVVFDDISDVISAQ--------------RSIAWGEVARRLAHEIKNPLTPIQ--LSAER 552 Query: 302 LRLQQSEALREQAGQIV-WGLESAGRQVDHAAAIIKSVREYVVRLEQSEGLIDLNAVLQD 360 L ++ L E +++ E+ QV ++ R+Y +DLNA++++ Sbjct: 553 LHMKLEGKLNEADAKVLERSTETIVNQVTAMKRMVDDFRDYAKTPPAVLSSLDLNALIEE 612 Query: 361 VRWFIEMKAAEGKVHLHFLPCAEPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVR 420 + + +G+ +H + ++ + + QVI NL NA + + D E A R Sbjct: 613 ILHL--YLSGDGRDIIHATLAQDLPLIMGDPTQLRQVIHNLLQNAQDAVADRGEQAAPAR 670 Query: 421 ITT------RRAGDHAL-----LSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCK 469 I R+ D A+ L++ D G G F+ + +SK G G+GLA+ K Sbjct: 671 IDIITEEIHYRSSDGAVSNAVQLTITDNGPGFTPKILAHAFEPYITSKPRGTGLGLAMVK 730 Query: 470 NIIARHRGDIWAQ 482 II H G I Q Sbjct: 731 KIIEEHGGRIDIQ 743 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 103/214 (48%), Gaps = 19/214 (8%) Query: 274 AMGEMATAIAHELSQPLAAIRNFLEGSVLRLQQSEALREQAGQIVWGLESAGRQVDHAAA 333 A+GE+ +AHE++ P+A ++ L+ VLR A + G+ L+ +Q+ Sbjct: 451 AIGEITAGVAHEINNPVAVLQGNLD--VLRDTLGAAAKPVQGE----LQLMDQQIYRINT 504 Query: 334 IIKSVREYVVRLEQSEGLID---LNAVLQDVRWFIEMKAAEGKVHL-HFLPCAEPLVVSC 389 I+ + ++ E + G ++ ++ ++ D + + ++ + H P VS Sbjct: 505 IVTKLLQFASPGEFA-GYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEATLP--VSI 561 Query: 390 EKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRAGDH---ALLSVADEGRGIDAGHR 446 + + QV++NL NAI M D G+ + + + D +SVAD G GI Sbjct: 562 NRGELQQVLINLFTNAIHAMKD--GGSLTISTSDWQEADGKRGVAISVADTGSGIRKEDI 619 Query: 447 ERLFDGFFSSK-VSGNGIGLALCKNIIARHRGDI 479 +FD FF++K G G+GL++ ++AR+ G I Sbjct: 620 AHIFDAFFTTKRQGGTGLGLSISYTLVARYGGTI 653 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,161,813 Number of extensions: 47624 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 4 Length of query: 510 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 423 Effective length of database: 899,382 Effective search space: 380438586 Effective search space used: 380438586 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)