BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1146.p (309 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 218 5e-58 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 158 4e-40 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 104 6e-24 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 56 3e-09 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 218 bits (554), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 183/300 (61%), Gaps = 5/300 (1%) Query: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPTP 65 ++DLNLL F AI ER++T A RL +SQPA+S AL RLR IF+DPLF+RT +GMQPTP Sbjct: 5 SVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQPTP 64 Query: 66 AALELAKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELLTAQAP 125 A +L +P++RA + + AL+ FDPA +T+ F MT++ E++ LP+L + + AP Sbjct: 65 YAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVAAP 124 Query: 126 HTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKTVTCHELLFRETYVCMMRK-RPELPA 184 + ++V ++P +EA+ G++D A G P LK + L+ + + C++R+ P + Sbjct: 125 NACVRVRRIPEQGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGHPTV-- 182 Query: 185 RAQLTLDEFLALSHVLVESAESSHH-QVEHSFRTLGVQRKISLSIPHFTVLPRILGKSDL 243 LT +++ HV+V SA + H +E T ++RKI ++ +F VLP I+ ++D Sbjct: 183 HDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQTDA 242 Query: 244 VATVPARIAKLFHSEHPDVFLSYELPVKLPTVDITLHWHQAFDADAGNSWLRQIVIDLLQ 303 +AT+P R+A+ S + + E P+ P VDI HWH+ F D N W+R +++ L + Sbjct: 243 IATIPFRMAQKIASYSTGIKI-LESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVTLFR 301 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 19/307 (6%) Query: 3 TFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQ 62 +F +DLNLLRVF A+ E++LT A N L ++QPAVS AL RLR D L IRT G++ Sbjct: 2 SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVK 61 Query: 63 PTPAALELAKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELLTA 122 PT A EL + RAL ++ A+ + FD + + FR +M D ++LP L + Sbjct: 62 PTSRAEELWPVVRRALSDLEAAV-TPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEK 120 Query: 123 QAPHTRLQVEQVPPAHLE--EALRTGQLDFAFGNLPALKTVTC-----------HELLFR 169 AP L V VP E L G +D A G P + HE L+ Sbjct: 121 DAPG--LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYT 178 Query: 170 ETYVCMMRKRPELPARAQLTLDEFLALSHVLVESAESSHHQVEHSFRTLGVQRKISLSIP 229 YVC+MRK L A+ +LTLD + A H+LV + + ++ + LG +R+I L++ Sbjct: 179 GEYVCVMRKNHPL-AKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVN 237 Query: 230 HFTVLPRILGKSDLVATVPARIAKLFHSEHPDVFLSYELPVKLPTVDITLHWHQAFDADA 289 F R++ SDL+ +P + + + + ++ +LP +LP V + + WH+ + Sbjct: 238 QFFTAGRVVASSDLITVLPRHL--IASTGMAEALIAKDLPFELPDVHVDMLWHERDARNP 295 Query: 290 GNSWLRQ 296 + WLR+ Sbjct: 296 AHKWLRE 302 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 104 bits (260), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 7/299 (2%) Query: 5 NNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPT 64 +++D++L+R+ + E++++ +L+ QP++S +L +LR++ DPL +R GM PT Sbjct: 6 DHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPT 65 Query: 65 PAALELAKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELLTAQA 124 L K R L + F P R F + D F ++ L ++ Sbjct: 66 QHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRES 125 Query: 125 PHTRLQVEQV-PPAHLEEALRTGQLDFAFGNLPALKTVTCHELLFRETYVCMMRK---RP 180 P + + + + P L G+LD N + LF + VC+MR Sbjct: 126 PKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRSDCAYA 185 Query: 181 ELPARAQLTLDEFLALSHVLVESAESSHHQVEHSF-RTLGVQRKISLSIPHFTVLPRILG 239 + A+ +T++++L+L H +H +F ++R I + HF +LP ++ Sbjct: 186 KRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLPYMVE 245 Query: 240 KSDLVATVPARIAKLFHSEHPDVFLSYELPVKLPTVDITLHWHQAFDADAGNSWLRQIV 298 K+DLV T + + E SY +P+K P + WH+ + WLR V Sbjct: 246 KTDLVLTAGQQFTSFY--EKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQV 302 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 4 FNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQP 63 +++DL LLR F +A+E LT A R+ + QP +S + L + LF R GM+ Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 64 TPAALELAKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELLTAQ 123 T + L L+ V + R S R+ A F+P + + Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQK 120 Query: 124 APHTRLQVEQVPPAHLEEALRTGQLDFAF-----GNLPALKTVTCHELLFRETYVC---- 174 +P + VE+ L E LR +LD AF G+ LK T +L E V Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMET---MLVEEMIVALPIT 177 Query: 175 --MMRKRPELPARAQLTLDEFL 194 + ++R LP A L D+F+ Sbjct: 178 HRLAQRRKSLPLTA-LAEDDFI 198 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 685,867 Number of extensions: 26743 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 5 Length of query: 309 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 226 Effective length of database: 914,170 Effective search space: 206602420 Effective search space used: 206602420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)