BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1145.p
         (391 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ...   153   2e-38
gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino...    96   3e-21
gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra...    82   4e-17

>gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp.
           Marseille]
          Length = 408

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/382 (33%), Positives = 181/382 (47%), Gaps = 40/382 (10%)

Query: 25  NGPTVAIKDCIDIAGQPTCGGSAA-LADAPPAQSHAEVVQRLLDTGWQIIARANMHELAY 83
            G   A+KD  DIAG  T  G+   L+  P A  HA  V+RLL  G + + +    EL Y
Sbjct: 43  EGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELTY 102

Query: 84  GMTGINDWNGTPVNPQDPGRMTGGSSSGSASAVGAGLVDLSIGSDTGGSIRLPAACCGVI 143
            + GIN   G P NP  P R+ GGSSSGS +AV AGL D+++G+D GGS+RLPA+ CGV 
Sbjct: 103 SLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCGVW 162

Query: 144 GLKPTFGRVSRAGAYPAISSLDCVGPVARSMEMIIRAM--------TSIAPGFDRVAASA 195
           G++PT GR+S  G      S D VG  A ++E + +          TS+   F  +  S 
Sbjct: 163 GMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEHLEQTFCALAHAETTSMPATFLTLNDSG 222

Query: 196 -------AAAHARVKRVTVQADDDVAAAVAQAFSASRWSATWWTPQHMHAAFEAGMTLIN 248
                  A   A  K    Q+D     AV      + W+A +   Q   A  E G+ +  
Sbjct: 223 INGLLDPAVFDAFSKLKNEQSD---FLAVDSELELASWAAAFRILQASEAWMEHGLWVTQ 279

Query: 249 RETHDAFGHLLGQGKLGADIEQRLAAAATTTDAAVADAERVRAAFSAEVDAAL-ADADAL 307
                         +LG DI QR   AA  T   V  A+ VR A   E++  L +    +
Sbjct: 280 HAD-----------ELGVDIRQRFNIAAGVTATQVRTAQEVRIAAIRELNRILDSQHKVI 328

Query: 308 LLPTLPALPPTLQAIRQGTSVLLLSS--LVRPFNLSGHPALTIP-VPIAGSTLKAGLQLV 364
           +LPT+P   P L A       + + S  L+    L+G P L++P + + G+ +  GL ++
Sbjct: 329 VLPTVPTPAPLLTADSATVDDVRMRSQHLLCIAGLAGLPQLSMPWIQVNGAPV--GLSII 386

Query: 365 GRKGDDERLCALGRHLEQALQA 386
           G +G DE +     H    LQA
Sbjct: 387 GGRGCDEIVL----HAAHKLQA 404


>gi|152979784|ref|YP_001354768.1| allophanate hydrolase
           [Janthinobacterium sp. Marseille]
          Length = 598

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 98/178 (55%), Gaps = 8/178 (4%)

Query: 26  GPTVAIKDCIDIAGQPTCGGSAALADAPPAQSHAEVVQRLLDTGWQIIARANMHELAYGM 85
           G   A KD ID+AG  T       A    A+ HA VVQRLLD G  +I + N+ + A G+
Sbjct: 70  GVPFAAKDNIDVAGIRTTAACPEFAYI--AEQHATVVQRLLDAGAIVIGKTNLDQFATGL 127

Query: 86  TGINDWNGTPVNPQDPGRMTGGSSSGSASAVGAGLVDLSIGSDTGGSIRLPAACCGVIGL 145
            GI    G   N  DP  ++GGSSSGSAS V  GLV  S+G+DT GS R+PA    ++GL
Sbjct: 128 VGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPAGLNNIVGL 187

Query: 146 KPTFGRVSRAGAYPAISSLDCVGPVARSMEMIIRAMTSIAPGFDRVAASAAAAHARVK 203
           KPT G +S  G  PA  +LDCV   A ++       T  A GFD     AA A++R +
Sbjct: 188 KPTVGSLSGRGVVPACRTLDCVSIFATTVADAELVFTQAA-GFD-----AADAYSRAR 239


>gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA
           amidotransferase subunit A [Janthinobacterium sp.
           Marseille]
          Length = 485

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 59  AEVVQRLLDTGWQIIARANMHELAYGMTGINDWNGTPVNPQDPGRMTGGSSSGSASAVGA 118
           A VV++    G   + + N  E A G +  N + G   NP D   + GGSS GSA+A+ A
Sbjct: 100 ATVVEQFKQAGMVHLGKLNCDEFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAA 159

Query: 119 GLVDLSIGSDTGGSIRLPAACCGVIGLKPTFGRVSRAGAYPAISSLDCVGPVARSME--- 175
            L   S  +DTGGSIR PAA CGV G+KPT+G VSR G     SSLD  GP+A++ E   
Sbjct: 160 RLTPASTATDTGGSIRQPAALCGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCG 219

Query: 176 MIIRAMTSIAP 186
           +++ AMT   P
Sbjct: 220 LLLNAMTGFDP 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 766,255
Number of extensions: 27885
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 306
Effective length of database: 906,776
Effective search space: 277473456
Effective search space used: 277473456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)