BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1142.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 275 4e-75 gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 214 8e-57 gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 207 5e-55 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 207 7e-55 gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxyg... 201 7e-53 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 275 bits (702), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/314 (46%), Positives = 192/314 (61%), Gaps = 2/314 (0%) Query: 5 VDRLTDETGDIRSFRLVRADGAALPAYEPGAHIDVTGPTGIVRQYSLCGPLEDRCGYTIA 64 V ++T E DI+SF L G ALPA+ PG+HIDV G++RQYSLC ++ Y IA Sbjct: 8 VHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVHIGEGLIRQYSLCNGPDEPDRYLIA 67 Query: 65 VKREPASRGGSAALHDTVQLGMELEVGTPRNLFALDARAPEHLLFGAGIGVTPLLAMAYR 124 VK+E SRGGS A+H++++ G ++++ PRN F L+ +LL GIGVTP+L+MA Sbjct: 68 VKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTPVLSMARH 127 Query: 125 LWAEQKPFTLHYFVRAREHAAFVDLLENAPFAAQVCFHYAVMPAQMEHYLAACLAAGSKE 184 L A+ F L YF R+ H AF LL F ++ FHYA+ P + YL L + Sbjct: 128 LLAQGVEFELQYFTRSIAHTAFHALLSEPEFQGRIKFHYALEPEGLRAYLRKLLWHYPEN 187 Query: 185 AHVYTCGPAPFMEAVVKCAAANRSEEAIHLEHFQAAPAASEAVGGDGVFEVQLASSGKVV 244 +Y CGP FM+ V AAA EA+HLE+F A P + G FEV+LA +G Sbjct: 188 GSLYLCGPRVFMDLVESTAAATWPPEAVHLEYFSADPLS--LAGEQESFEVRLARTGGTY 245 Query: 245 QIPVGIPIVDVLAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQICT 304 +P G+PI + LA GI IDTSC +G+CGTC+ +LEG PDHRD LS EK + D+I Sbjct: 246 AVPAGMPITEALAAHGIHIDTSCEQGVCGTCLTGVLEGTPDHRDVYLSDAEKKSCDKIMP 305 Query: 305 CVSRARSARLVLDL 318 CVSRA+S LVLDL Sbjct: 306 CVSRAKSPLLVLDL 319 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 214 bits (544), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 171/315 (54%), Gaps = 11/315 (3%) Query: 11 ETGDIRSFRLVRADGAALPAYEPGAHIDVTGPTGIVRQYSLCGPLEDRCGYTIAVKREPA 70 E IRSF L G LPA GAHIDV P G+VRQYSL P E + Y I V R+P Sbjct: 17 EAEQIRSFELCPLAGERLPAAAAGAHIDVHLPNGLVRQYSLLHPGESK-AYMIGVNRDPV 75 Query: 71 SRGGSAALHDTVQLGMELEVGTPRNLFALDARAPEHLLFGAGIGVTPLLAMAYRLWAEQK 130 SRGGS+ LH+ V+ G L + PRN F L A +L GIG+TP+ +M RL + Sbjct: 76 SRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGITPIFSMVQRLNQIGR 135 Query: 131 PFTLHYFVRAREHAAFVDLLENAPFAAQVCFHYAV---MPAQMEHYLAACLAAGSKE--- 184 +TL+Y R E AAF+D L+ + + V +P LA + E Sbjct: 136 AWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVPGNQMLNLAELVQHSEAEHAG 195 Query: 185 -AHVYTCGPAPFMEAVVKCAAANRSEEAIHLEHFQAAPAASEAVGGDGVFEVQLASSGKV 243 AH Y CGP ++ + A A + E +H+E+F +APA + V F V LA SG+ Sbjct: 196 AAHFYCCGPGMLLQGFQQ-ATATVAAERVHVEYF-SAPAVASNVAAK-TFSVTLARSGQT 252 Query: 244 VQIPVGIPIVDVLAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQIC 303 QIP I++VL +G+ + +SCREG+CG+C +L GEP+HRD LS E+A N + Sbjct: 253 FQIPADQSILEVLLSKGVSVLSSCREGVCGSCETAVLAGEPEHRDAVLSAAERADNRTMM 312 Query: 304 TCVSRARSARLVLDL 318 CVSR + L LDL Sbjct: 313 LCVSRCKGTSLTLDL 327 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 207 bits (528), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 133/329 (40%), Positives = 184/329 (55%), Gaps = 22/329 (6%) Query: 1 MKLIVDRLTDETGDIRSFRLVRADGAALPAYEPGAHIDVT----GPTGIVRQYSLCGPLE 56 + ++V + T I++F L DG ALPAY GAHI V G R YSL ++ Sbjct: 12 ITVVVSEIRALTPTIKAFVLHSTDGTALPAYTAGAHIRVQVILPGGDADERSYSL---ID 68 Query: 57 DRCG------YTIAVKREPASRGGSAALHDTVQLGMELEVGTPRNLFALDARAPEHLLFG 110 D G Y IAV+RE +GGSA +H +++G L + P+N F LDA A ++L Sbjct: 69 DSVGSECRSYYRIAVQREAKGKGGSAFMH-GLEVGSHLSIRPPKNDFPLDASARHNVLIA 127 Query: 111 AGIGVTPLLAMAYRLWAEQKPFTLHYFVRAREHAAFVDLLENAPFAAQVCFHYAVMPAQM 170 GIG+TP+LAMAY L A + F HY R+ + AF D++E AA ++ + Sbjct: 128 GGIGITPILAMAYALQAGGRSFEFHYGTRSPDLMAFRDVVETFRNAA---LYFDGGDPRR 184 Query: 171 EHYLAACLAAGSKEAHVYTCGPAPFMEAVVKCAA-ANRSEEAIHLEHFQAAPAASEAVGG 229 L A LA + HVY CGP ++AV+ A +++ +H E F + PAA GG Sbjct: 185 GLQLEALLAHPANGKHVYVCGPRGLIDAVIATAKHYGWADDHVHFELFNS-PAAQ---GG 240 Query: 230 DGVFEVQLASSGKVVQIPVGIPIVDVLAREGIVIDTSCREGICGTCVVPLLEGEPDHRDN 289 D FEV+L +SGK +Q+PV I+DV+ G + C+ G CG C +LEG PDHRD Sbjct: 241 DTAFEVELRASGKTLQVPVDKSILDVILAAGCDLMYDCKRGECGMCATAVLEGIPDHRDY 300 Query: 290 CLSKKEKAANDQICTCVSRARSARLVLDL 318 L + E+AA +C CVSRA+SARLVLD+ Sbjct: 301 NLPEDERAAGKVMCICVSRAKSARLVLDI 329 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 207 bits (527), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 173/316 (54%), Gaps = 10/316 (3%) Query: 5 VDRLTDETGDIRSFRLVRADGAALPAYEPGAHIDVTGPTGIVRQYSLCGPLEDRCGYTIA 64 V R E+ + +F L R+ LP + GAHI++ P+G+VRQYS+ +R TI Sbjct: 273 VLRRWKESDGVMAFEL-RSISGKLPPMQAGAHINLRTPSGLVRQYSIVNAPTERATLTIG 331 Query: 65 VKREPASRGGSAALHDTVQLGMELEVGTPRNLFALDARAPEHLLFGAGIGVTPLLAMAYR 124 VK EP SRGGSA++H + G LE RN F L +L GIG+TPL++MA Sbjct: 332 VKLEPDSRGGSASMHASALPGTHLEFVPTRNTFPLLDTPKYPVLIAGGIGITPLVSMAQA 391 Query: 125 LWAEQKPFTLHYFVRAREHAAFVDLLENAPFAAQVCFHYAVMPAQMEHYLAACLAAGSKE 184 L A K F LHYFVR+ EH +F + A F ++ H A P + + L L S+ Sbjct: 392 LHAAGKDFRLHYFVRSDEHVSFASRM--AAFQDKLVLHAACTPQETKSILDQVLTQSSQP 449 Query: 185 AHVYTCGPAPFMEAVVKCA-AANRSEEAIHLEHFQAAPAASEAVGGDGV-FEVQLASSGK 242 VY CGP P + + C AA + + E F+ ++ GDG F V+L +G+ Sbjct: 450 QIVYACGPGPMLTTIRACTQAAGMPDADVRFEIFR-----NDKDFGDGKPFTVKLKRNGQ 504 Query: 243 VVQIPVGIPIVDVLAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQI 302 + +P G ++ L R GI ++ SC +GICG+C+ + G P+HRD+ L+ +EKAAN + Sbjct: 505 TITVPRGETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAANTCM 564 Query: 303 CTCVSRARSARLVLDL 318 CVSRA S L LDL Sbjct: 565 MACVSRAISEELELDL 580 >gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 321 Score = 201 bits (510), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 138/313 (44%), Positives = 175/313 (55%), Gaps = 16/313 (5%) Query: 14 DIRSFRLVRAD--GAALPAYEPGAHIDVTGPTGIVRQYSLCGPLEDRCGYTIAVKREPAS 71 ++ +F LV AD A LPA E GAHIDV P G+VRQYSL C Y I VKREP S Sbjct: 17 EVAAFELVNADDENAPLPAAEAGAHIDVHLPNGLVRQYSLTDCRTGACSYVIGVKREPNS 76 Query: 72 RGGSAALHDTVQLGMELEVGTPRNLFALDARAPEHLLFGAGIGVTPLLAMAYRLWAE--- 128 RGGSAA+H+ V G L++ PRN F L + LL GIG+TPLLAMA L A+ Sbjct: 77 RGGSAAMHELVMQGDVLQISLPRNNFPLQKASGPTLLIAGGIGITPLLAMARALAADPAC 136 Query: 129 QKPFTLHYFVRAREHAAFVDLLENAPFAAQVCFHYAVMPAQMEHYLAACLAAGSKEAHVY 188 ++ + LHYF R+ HAAF E A Y + ++ L + AHVY Sbjct: 137 REKYALHYFCRSPLHAAFSK--EIAALQQADGMVYGADADETAKHIRQLLQQRPEGAHVY 194 Query: 189 TCGPAPFMEAVVKCA-AANRSEEAIHLEHFQAAPAASEAV--GGDGVFEVQLASSGKVVQ 245 TCGP P + VV A E+AIH+E+F S V GG+ F V+ A S Q Sbjct: 195 TCGPGPMIATVVDTARECGWPEDAIHVEYF------SNQVDHGGERPFRVRCAGSKLEFQ 248 Query: 246 IPVGIPIVDVLAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQICTC 305 + VG IV+ A G+ I TSC +G+CGTC+ +L G+P+HRD L+ EKA+ Q+ C Sbjct: 249 VAVGQSIVEAAAEAGLAIATSCEQGVCGTCLTNVLSGQPEHRDLYLTDAEKASGKQMLLC 308 Query: 306 VSRARSARLVLDL 318 VSR R LVLDL Sbjct: 309 VSRCRGDELVLDL 321 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 760,377 Number of extensions: 32133 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 7 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)