BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1140.p (210 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981441|ref|YP_001352157.1| two-components system response ... 149 9e-38 gi|152981398|ref|YP_001354111.1| two-components system response ... 125 2e-30 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 75 3e-15 gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419 [... 74 9e-15 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 71 4e-14 >gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 149 bits (377), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 12/198 (6%) Query: 7 VVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLS------CLILDVRMP 60 +++I+DD+E +R SL WL S I +D AFL D + C++LDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMP 60 Query: 61 EISGFQLQDRLKEIG--ADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQ 118 E+SG L D L G PVIF++GHGD+PM+V L GA DF EKP+N ++++RIQ Sbjct: 61 EVSGVALFDLLTSRGLTQTFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRIQ 120 Query: 119 LTLKNVAGNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVH 178 L + + + RL L+ RERE+L+ ++ G+ +K+IA L IS++TV+VH Sbjct: 121 EAL----ASSEHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVH 176 Query: 179 RASVKDKLGCQSTATLVR 196 RA + DK+ ++ L R Sbjct: 177 RAHIFDKMNVKTAVELAR 194 >gi|152981398|ref|YP_001354111.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 226 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 108/197 (54%) Query: 2 ETNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPE 61 + P V+ IVDDD + R +L LL + R + G L + N C+ILD+ MP Sbjct: 9 KAEPAVIRIVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLSGIGNESGCIILDINMPG 68 Query: 62 ISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTL 121 SG LQ+ L +P+IF++G + S+RA+ GA DF KP +SQ +L + TL Sbjct: 69 PSGLDLQEMLVADAHPLPIIFITGEATVSDSIRAMKAGAADFFCKPLDSQALLCTLDKTL 128 Query: 122 KNVAGNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRAS 181 K+ A + + L+AR TLT RE+E+L V G +K I+ L+++ +TV HRA Sbjct: 129 KDAACKRKKSKELCDLEARYATLTSREKEVLAMVTRGALNKQISAKLDVAERTVKAHRAK 188 Query: 182 VKDKLGCQSTATLVRDV 198 V +K+ ++ A LV V Sbjct: 189 VMEKMEVKTLAELVHVV 205 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 11/202 (5%) Query: 8 VYIVDDDEAVRTSLAWLLSSVN---IRTECFDGPGAFLKAYDANSLSCLILDVRMPEISG 64 + I DD +R L ++S V+ + E +G L+ + + L+LD+ MP SG Sbjct: 4 ILIADDHAIIRDGLKQIISFVSNMAVAGEASNGE-EVLQKLRSLQVDVLVLDMSMPGRSG 62 Query: 65 FQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKN- 123 L ++ I D+P++ +S H + +V+A+ GA ++ K S Q++E I+ + Sbjct: 63 IALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVAEGG 122 Query: 124 --VAGNMQARERRQQLKARL----KTLTVREREILEKVIMGQSSKLIARDLNISVKTVDV 177 V+ + A+ +Q K LT RE +I ++ G S IA+ L++S KT+ Sbjct: 123 TFVSPEISAKLIKQLHKPETDLPHTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTIST 182 Query: 178 HRASVKDKLGCQSTATLVRDVL 199 H+A+V K+ +TA+LV L Sbjct: 183 HKAAVLQKMEASTTASLVYYAL 204 >gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacterium sp. Marseille] Length = 128 Score = 73.6 bits (179), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 5 PPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPEISG 64 P + +V+DD +R ++ +L++ F FL++ S+ CL+LD+ +P ISG Sbjct: 7 PWKIAVVEDDNGLRAAILRMLNACGWNPVGFASAEGFLESAVVESIDCLVLDLYLPGISG 66 Query: 65 FQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKNV 124 F+L +++K G DIP+IF++ D + VR G + +L KP+ Q + +++ LK+ Sbjct: 67 FELLEQIKAKGMDIPIIFITAQDDEKIRVRVEGVGKL-YLPKPFTGQSLASKVKDCLKHA 125 Query: 125 A 125 Sbjct: 126 G 126 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 71.2 bits (173), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 11/198 (5%) Query: 8 VYIVDDDEAVRTSLAWLLSSV---NIRTECFDGPGAFLKAYDANSLSCLILDVRMPEISG 64 + +VDD VR + + ++ V I E A ++ A ++LD+ MP+ SG Sbjct: 4 ILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEA-IRLVRAQDWDIVLLDINMPDKSG 62 Query: 65 FQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLK-- 122 ++ ++K ++PV+ +S H + +V+ L +GA +++K +++++ IQ L+ Sbjct: 63 VEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRGH 122 Query: 123 -----NVAGNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDV 177 VA + K +TL+ RE EI K+ G IA +L +SVKTV Sbjct: 123 KYISHTVAELLTTELDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVST 182 Query: 178 HRASVKDKLGCQSTATLV 195 +RA V K+ ++ A ++ Sbjct: 183 YRARVLQKMNMENNAGII 200 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 443,679 Number of extensions: 16125 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 14 Length of query: 210 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 131 Effective length of database: 928,958 Effective search space: 121693498 Effective search space used: 121693498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)