BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1139.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 459 e-130 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 437 e-124 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 420 e-118 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 407 e-115 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 404 e-114 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust. Identities = 257/512 (50%), Positives = 358/512 (69%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTL 60 N++IG+RL GF VVL S+ +AA GI +L V+ TR M+++P+ ER+V W + Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAI 62 Query: 61 LLIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVA 120 +I RT V KS DP L F K AA SK+S + ++ +E LL +D+EK+++A I Sbjct: 63 TKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDV 122 Query: 121 RKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADI 180 RK FL R+ + K +G A+ + + ++ A + + ++ ER ++D +A + Sbjct: 123 RKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQL 182 Query: 181 QQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMG 240 A+S Q+ L A++L GI A LT ITRP+ A+ ++RVA GDLT+ + Sbjct: 183 SDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAES 242 Query: 241 RDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DE GQL+A+L+ M++ L +V VRLG ++I AS EIA GNLDLS+RTE+QA +LEET Sbjct: 243 KDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEET 302 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 A+S+E+LTS+V+ N+++A QAN L SA+ +A +GG V+ +++ TM +INESSRKIVDII Sbjct: 303 ASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSV 422 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 KV G++LV +AG TM E+V S++ ++GEI+ AS+EQ+ GI Q+NQA+ QMD VTQ Sbjct: 423 GKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 QNA+LVE+AAAAA+S++DQA +L + V F L Sbjct: 483 QNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/512 (50%), Positives = 347/512 (67%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTL 60 + N RIG+RL GF +VL S+ A+ + + A+ TR MM+ PL ER+ W Sbjct: 3 FLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWYVF 62 Query: 61 LLIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVA 120 + AI RT+ + +S D L A S+K+ + LK +E ++TSD E+K++ Sbjct: 63 IYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTIEL 122 Query: 121 RKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADI 180 RK + ++ + AKK G+ A+ E Y + ++ A Q + L +R ID+IS DI Sbjct: 123 RKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISRDI 182 Query: 181 QQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMG 240 S + L +++L G A A+++TRSIT+P+ +A+ ++ R A GDLT Sbjct: 183 DDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGKPS 242 Query: 241 RDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DE+G L+ +L GM++ L +V+ V+ G D I AS EIA+GNLDLS+RTE+QA +LEET Sbjct: 243 KDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLEET 302 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 A+S+E+LTS+V+ N+E+A QAN L SA+ +A +GG V+ E+I+TMG IN SSRKIVDII Sbjct: 303 ASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGDSV 422 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 V AGS+LV +AGKTM +VV S++ ++ EI AS+EQ+ GI QVN A+SQMD VTQ Sbjct: 423 SNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 QNAALVE+AAAA++SL DQA +L + V F L Sbjct: 483 QNAALVEEAAAASQSLRDQADKLAQIVNVFKL 514 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 251/511 (49%), Positives = 343/511 (67%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 I N++I +RL GFA++L +++ VGI RLQ V M L ERL +W + + Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 + RT K+ E +AF K+ +S + + K++E ++ + E+K++F + VAR Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 122 KQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADIQ 181 + IR ++ K +G + + L ++ + ++ A+L E+ IDE IQ Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 182 QDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMGR 241 S + + L A + G+ FA L SITRP+N A+ +++ VA+GDL+++ + Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSN 242 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE GQL+ +L+ M++ L+ VS VR G ++IA AS +IA+GNLDLS+RTEEQA +L ETA Sbjct: 243 DETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETA 302 Query: 302 ASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDIIG 361 AS+ QLTS+VR N+++A QAN L SA+ +A +GG V+ E++ TM +INES+RKIVDII Sbjct: 303 ASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIIS 362 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSVE 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAKEIK LI DSV Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVG 422 Query: 422 KVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQQ 481 KV AGS+LV +AG TM E+V SV+ ++ EI AS+EQ+ GI QVNQA+ QMD VTQQ Sbjct: 423 KVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQ 482 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 NAALVE+AAAAA+SL+DQA L R V+ F L Sbjct: 483 NAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/512 (49%), Positives = 350/512 (68%), Gaps = 5/512 (0%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 I N++IG RLG GF ++L+ + A GI RL+ + +R ++D LK ++ W LL Sbjct: 3 IANMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDW--LL 60 Query: 62 LIAIQ--RTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINV 119 ++ RT +VKS DPE + F K A SK+ VE L + EEK++FA + Sbjct: 61 ATSVNGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGK 120 Query: 120 ARKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISAD 179 R ++ +R I+A K++G+ A+ ++L + + ++R +L + + Sbjct: 121 KRAVYVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQS 180 Query: 180 IQQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRA-QP 238 I D AS + + + LL G A LT ITRP+ AL++++ VA GDLT+R+ P Sbjct: 181 ITADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTMP 240 Query: 239 MGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALE 298 DE G L+ +L+ M + L V+ +R+G D+IA AS EIA+GNLDLS+RTE+QA +LE Sbjct: 241 AANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 299 ETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVD 358 ETA+S+E+LTS+V+ N++++ QAN L +A+++A +GG V+ E++ TMG+INES++KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVD 360 Query: 359 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDD 418 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGD 420 Query: 419 SVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGV 478 SVEKV AGS+LV +AG TM E+V V+ ++ EI+ AS+EQ++GI QVNQA+ QMD V Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQV 480 Query: 479 TQQNAALVEQAAAAAKSLEDQAAQLKRAVAFF 510 TQQNAALVE+AAAAA+SL+DQA L +AV+ F Sbjct: 481 TQQNAALVEEAAAAAESLQDQAKNLAQAVSVF 512 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/514 (48%), Positives = 348/514 (67%), Gaps = 4/514 (0%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 I N++IG RLG FAV+L+ + VG+WRLQ VAQ T M + K ERL +W Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHK-ERLTHEWYLGN 61 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 + RT ++S+D E++ KE S+E ++ ++ L+ S+E KK+ + + R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 122 KQFLTIRDQIYAAKKQGDAAKVE---ELYQKQYVGIAANTQGAMRALLDFERARIDEISA 178 ++ IR ++ K + +AA +L + + A +++A++ F++ A Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 179 DIQQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQP 238 D+ AS + + L ++ L+ A LL+RSITRP++ A+++++ VA+GDL ++ Q Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQS 241 Query: 239 MGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALE 298 DE GQL+ +L+ M++ L VS VR G ++IA AS +IA GNLDLS+RTEEQA +LE Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 299 ETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVD 358 ETA+S+E+LTS+V+ N+++A QAN L SA+ +A +GG V+ ++ TM IN S++KIVD Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVD 361 Query: 359 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDD 418 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAKEIK LI D Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 419 SVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGV 478 SV+KV GS+LV +AG TM EVV SV+ ++ EI AS+EQ+ GI QVNQA+ QMD V Sbjct: 422 SVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 479 TQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 TQQNAALVE+AAAAA+SL +QAA+L AV+ F L Sbjct: 482 TQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 818,162 Number of extensions: 27613 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 21 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)