BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1138.p
         (258 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981399|ref|YP_001355230.1| molybdopterin binding oxidoredu...   299   1e-82
gi|152981294|ref|YP_001355063.1| putative sulfite oxidase subuni...    71   7e-14

>gi|152981399|ref|YP_001355230.1| molybdopterin binding
           oxidoreductase [Janthinobacterium sp. Marseille]
          Length = 258

 Score =  299 bits (765), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 142/257 (55%), Positives = 194/257 (75%), Gaps = 1/257 (0%)

Query: 1   MKKQDDVTSRPAEEISLRDHRQALVKVERRLLLRSALSLGALSMLSGCDLQDNDSVDKVL 60
           +KK+  V    AE + L D  + + +  RR  L+  L+LG LS+L+GC + D+ SV++ L
Sbjct: 2   LKKKSIVMPSNAEAM-LADAIRKVQQPSRRAFLQRTLTLGGLSLLTGCSISDDSSVEQAL 60

Query: 61  WAMSRWNDRVQAMLFRGQKLAPTYAASQITDPFPFNAFYEEFNAPDIDGSAWRLEVSGLV 120
             +S++ND+ QA++F   +LAPTY  S IT PFPFNA+Y       +DG AWRLE+SGL+
Sbjct: 61  SKVSQFNDKAQALIFDPNRLAPTYPDSMITRPFPFNAYYGVDEVRQVDGEAWRLELSGLI 120

Query: 121 SDKRPWTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKC 180
           +++ PW+L +L+ LP + Q+TRHIC+EGWSAIG+W GVP   FL+ +GADL+A+YVGFKC
Sbjct: 121 ANRAPWSLAQLQRLPHSEQVTRHICVEGWSAIGKWGGVPFSYFLRQIGADLSAKYVGFKC 180

Query: 181 ADRYYSSLDMPTALHPQTILALDFGQQALPTAYGYPLKVRVPTKLGFKNPKHVVAIFVSN 240
           AD YY+S+DMPTALHPQT++AL +  + LP  YGYP+K+R+PTKLG+KNPKH+ AI+V+N
Sbjct: 181 ADDYYTSIDMPTALHPQTLMALTYDGKTLPPEYGYPMKLRMPTKLGYKNPKHIQAIYVTN 240

Query: 241 QNPGGYWEDQGYNWFSG 257
             PGGYWEDQGYNWF G
Sbjct: 241 TYPGGYWEDQGYNWFGG 257


>gi|152981294|ref|YP_001355063.1| putative sulfite oxidase subunit
           YedY [Janthinobacterium sp. Marseille]
          Length = 325

 Score = 70.9 bits (172), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 31/197 (15%)

Query: 91  DPFPFNAFYE---EFNAPDIDGSA-----WRLEVSGLVSDKRPWTLER---LRALPQAGQ 139
           D   +N +YE   +  +P    SA     W + + G +  K+P TL+    L+  P   +
Sbjct: 80  DATTYNNYYEFGTDKESPARYASALKTRPWTVSIEGEI--KKPMTLDLDSLLKLAPLEER 137

Query: 140 ITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGF-KCADR--------------Y 184
           + R  C+EGWS +  W G  L   ++ V  +  A+YV F   AD+              Y
Sbjct: 138 VYRLRCVEGWSMVIPWIGYSLSELIKKVEPNSNAKYVEFVTVADKEAMHGLNRAVLDWPY 197

Query: 185 YSSLDMPTALHPQTILALDFGQQALPTAYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPG 244
              L +  A HP T+L L    + LP   G P+++  P K GFK+ K +V I    + P 
Sbjct: 198 VEGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIVTPWKYGFKSAKSIVKIRFVKEQPR 257

Query: 245 GYWE---DQGYNWFSGI 258
             W     + Y ++S +
Sbjct: 258 TAWNLAAPREYGFYSNV 274


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 616,284
Number of extensions: 24859
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 177
Effective length of database: 921,564
Effective search space: 163116828
Effective search space used: 163116828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)