BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1132.p
         (389 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981116|ref|YP_001353696.1| benzoate transport protein [Jan...   301   3e-83

>gi|152981116|ref|YP_001353696.1| benzoate transport protein
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  301 bits (772), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 238/378 (62%), Gaps = 1/378 (0%)

Query: 12  VAGFLAVLISYAGPLVIFVQAAHAGQVPTPQLVSWVWAISMGAGVSGLLLSWWFRLPIIT 71
           VAG ++V+++Y G  ++  QAA A  +      SWVW+IS+G GV+GL+LSW  R PIIT
Sbjct: 20  VAGLISVIVNYGGTFILVFQAAKAANLSPELTASWVWSISIGVGVTGLILSWMSREPIIT 79

Query: 72  AWSAPGTALLLSLFPGISMSEVVGAYLMAALILIAIGVTGYFEKILAFIPKGIAAGMMAG 131
           AWS P  A L++       +E VGAY+++A   + +G++G+FE+++  IP G+AAG++AG
Sbjct: 80  AWSTPAAAFLVTALATTPYAEAVGAYMVSAAAFVLLGLSGWFERVIRLIPPGVAAGLLAG 139

Query: 132 ILFQFGVQAFRSSVGAPLMVFAMLAAYLAGRRWWPRYGIVVVALTGFAVAFASGRTDLGA 191
           IL QFG+ AF      PL+   ++AAYL  +R   RY +V + L G        R DL  
Sbjct: 140 ILLQFGIGAFGGMSLDPLLTGLLIAAYLVFKRCAARYAVVGILLLGLVFLLLQDRVDLSG 199

Query: 192 VSLELARPVFIAPHVGLGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYHPPTRAVVTGTG 251
           +SL+LA PVF  P   L    S+ +PL L++LTGQ++PGM VL+  GY      +VT TG
Sbjct: 200 LSLKLAAPVFTMPMFSLNALLSVALPLFLITLTGQYMPGMLVLRNDGYQTSANPIVTLTG 259

Query: 252 LASLAMACFGGITIVLAAITAALCTGKDAHPEPGKRYIAGIANGVFYLIGGTFAASIVTL 311
           L SL MA FG     +AAITAA+CTG++AH  P +R+IAGIA GV Y+  G F  ++  +
Sbjct: 260 LGSLLMAPFGSHAFNIAAITAAICTGREAHENPSRRWIAGIAAGVCYIFVGVFGVTLAAV 319

Query: 312 FAAFPKELIAALAGLALIGAIVSNLRLMSQEGSYLEPSVITFLATASGMSLFGLGAAFWG 371
           F AFP   I  LAGLAL+G I  +L     +    E ++ITFLA A+ ++L G+G AFWG
Sbjct: 320 FMAFPASFITTLAGLALLGTIGGSLASAMADAQTREAALITFLAAAANITLLGIGGAFWG 379

Query: 372 VVFGMSAYWLI-GRPLKK 388
           +V G+ AY ++ GR  +K
Sbjct: 380 LVIGLLAYAVLNGRMPQK 397


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 865,553
Number of extensions: 34093
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 304
Effective length of database: 906,776
Effective search space: 275659904
Effective search space used: 275659904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)