BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1131.p (453 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 166 3e-42 gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 143 2e-35 gi|152980910|ref|YP_001353544.1| major facilitator transporter [... 62 7e-11 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 57 3e-09 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 214/417 (51%), Gaps = 27/417 (6%) Query: 14 GFTRFHWMVMCLCALLLVFDGYDLFIYGAVLPVLMKHWSLSPVQAGALGSYALFGMMFGA 73 + RF +MV+ AL FD DL + +L + + L+ QAG LGS + GM GA Sbjct: 24 NYHRFLFMVI---ALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGA 80 Query: 74 FIFGPLADRIGRKKGVAISFVLFSVSTFLSGFSSTPNEFGVYRFLAGLGCGGLMPNAVAL 133 G LAD+ GRK IS +++ V+++L ++ P +YR L G+G G +P A L Sbjct: 81 VSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTL 140 Query: 134 MNEYAPKRLRSTLVAIMFSGYSLGGVLCAGL-GIWMLPNFGWQSMFFAAAVPLVLLPLIL 192 ++E+ P + R +A+M + + +CAGL ++L ++ W++MF A+P V L +I Sbjct: 141 LSEFIPAKRRGKYLALMDGNWPIA-FICAGLMSYYVLASYSWRTMFLLGAIPAVFLFVIR 199 Query: 193 WKLPESVGFLLRAGRQEQARAML----AQVAPHLRIDADTQLVQA----DAKGAGAPML- 243 +PES +L GR +A ++ +V L++D+ +VQ D + G +L Sbjct: 200 RYVPESPRWLESKGRHAEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKVLW 259 Query: 244 -DLFKQDRPVGTLMIWIAFFCCLLMVYALGSWLPKLMASAGYSLGSSLSFLLALNFGGVV 302 ++++ TL +W +F LL Y L +W+ L+ +G + S+ + + + GG+ Sbjct: 260 SPVYRRR----TLTVWGLWFFALLGFYGLNTWIGALLQQSGLEVTKSVLYTVYIACGGIP 315 Query: 303 GAIGGGWLGDRFTLPKVVVSFFTVGTVAIALLGFNSPTPVLYLLIIVAGAT----TIGTQ 358 G + W+ +R+ VS G V + + G+ + + ++ ++ AGA G Sbjct: 316 GFLWAAWVVERWGRKPACVSTLLGGAVMVFIYGWVASSAHTFIALVSAGAMMQFFMFGMW 375 Query: 359 ILLYANTAQFYPLASRSTGLGWASGVGRSGAIVGPLLGGALMAAALPLKMNFLVFAI 415 +LY T + YP +R++G G AS VGR G+++GP + G + LPL VF + Sbjct: 376 AVLYTYTPELYPTRARASGCGMASTVGRLGSLLGPTIVGVI----LPLVGQIGVFTV 428 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/406 (28%), Positives = 188/406 (46%), Gaps = 29/406 (7%) Query: 16 TRFHWMVMCLCALLLVFDGYDLFIYGAVLPVLMKHWSLSPVQAGALGSYALFGMMFGAFI 75 TR+ + + A FD DL I VL + ++L+ QAG L S + GM GA I Sbjct: 23 TRYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAI 82 Query: 76 FGPLADRIGRKKGVAISFVLFSVSTFLSGFSSTPNEFGVYRFLAGLGCGGLMPNAVALMN 135 G LAD+ GRK S + + + GF++ V+R + G G G P +++++ Sbjct: 83 AGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIGLSMVS 142 Query: 136 EYAPKRLRSTLVAIMFSGYSLGGVLCAGLGIWMLPNFGWQSMFFAAAVPLVLLPLILWKL 195 E P + R VAI+ + LG + L LP GW+ +F A ++P V + ++ + Sbjct: 143 EIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIFIALSIPAVFVFIVRRYV 202 Query: 196 PESVGFLLRAGRQEQARAMLAQVAPHLRIDADTQLVQADAKG---AGAPMLDLF--KQDR 250 PES +L GR +A A+ ++ + +++A+ AP ++ KQD+ Sbjct: 203 PESPRWLEEVGRDAEADAVTTKI--------EKNVIKANGGKPLPTPAPPINEMPKKQDK 254 Query: 251 PV------------GTLMIWIAFFCCLLMVYALGSWLPKLMASAGYSLGSSLSFLLALNF 298 T+M+W +F LL Y L +WL L+ AGY + S+ + + ++ Sbjct: 255 RALFAELWHGVYAKRTVMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSVMYTVYISL 314 Query: 299 GGVVGAIGGGWLGDRFTLPKVVVSFFTVGTVAIALLGFNSPTPVLYLLIIVAGATT---- 354 G+ G I WL +++ V A + G + +I AG Sbjct: 315 AGIPGFIFSAWLLEKWGRKPTCVLMLVGSACAAYVYGQVATAQAPVAQLIGAGLCMQFFL 374 Query: 355 IGTQILLYANTAQFYPLASRSTGLGWASGVGRSGAIVGPLLGGALM 400 G +LYA T + YP SR+TG G+AS +GR G+++GP G ++ Sbjct: 375 FGMWSVLYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVIL 420 >gi|152980910|ref|YP_001353544.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 436 Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 33/216 (15%) Query: 81 DRIGRKKGVAISFVLFSVSTFLSGFSSTPNEFGVYRFLAGLGCGGLMPNAVALMNEYAPK 140 ++G ++ +A + +S+ + + F +TP F V RFL G+ G P V + + P Sbjct: 87 HKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVAEAGFFPGIVLYLTYWFPT 146 Query: 141 RLRSTLVAIMFSGYSLGGVLCAGLGIWMLPNF-------GWQSMFFAAAVP-LVLLPLIL 192 R + A+ G + GV+ L W++ F GWQ +F A+P L L + L Sbjct: 147 SRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQWLFLLEALPSLALGIMTL 206 Query: 193 WKLPESVGFLLRAGR--QEQARAMLAQVAPHLRIDADTQLVQADAKGAGAPMLDLFKQDR 250 + LP S+ RA E +A+L I D + AG +F + Sbjct: 207 FYLPNSI----RASSWLSENEKAILEA-----NIAKDNSVGDKSHSVAG-----VFTNPK 252 Query: 251 PVGTLMIWIA---FFCCLLMVYALGSWLPKLMASAG 283 +W+ +FCC++ +Y + +LP L+ ++G Sbjct: 253 ------VWLMAAIYFCCMMGLYGISFYLPTLVKASG 282 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 22/204 (10%) Query: 31 VFDGYDLFIYGAVLPVLMKHW---SLSPV--QAGALGSYAL--FGMMFGAFIFGPLADRI 83 + + YD IYG ++ ++SPV ALG+YA+ F G IFG DR+ Sbjct: 33 IIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFFARPLGGAIFGHFGDRV 92 Query: 84 GRKKGVAISFVLFSVSTFLSGFSSTPNEFGVY--------RFLAGLGCGGLMPNAVALMN 135 GRK + ++ + + T L G T G++ RF+ G+G GG A ++ Sbjct: 93 GRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQGVGLGGEWGGAALMVL 152 Query: 136 EYAPKRLRSTLVAIMFSGYSLGGVLCAGLG--IWMLPN-----FGWQSMFFAAAVPLVLL 188 E+APK R +++ G+ LG VL G+ + LP +GW+ F + V +V+ Sbjct: 153 EHAPKHRRGFYGSLVQVGFPLGLVLATGVFAIVSKLPEADFLSWGWRIPFLLSIVLVVVG 212 Query: 189 PLILWKLPESVGFLLRAGRQEQAR 212 +I K+ ES FL + E ++ Sbjct: 213 YVIRSKVEESPIFLQMKAKNELSK 236 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 902,160 Number of extensions: 33499 Number of successful extensions: 242 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 13 Length of query: 453 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 367 Effective length of database: 903,079 Effective search space: 331429993 Effective search space used: 331429993 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)