BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1129.p (262 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 82 3e-17 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 80 2e-16 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 77 8e-16 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 74 8e-15 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 72 2e-14 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 124/252 (49%), Gaps = 19/252 (7%) Query: 16 VVTGAAQGILRGVALGIAAEGGQVLLVDRADFI-DEVAAQAEA-GRGSGFV-ADLETYAG 72 ++TGA GI R A A EG +V + R + + +AA+ A G + F+ AD+ A Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEAD 95 Query: 73 AQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMPTLYGCHAVLPY 132 + + Q + R+GRID+ +N G ++ P + AA +++ T+ + Sbjct: 96 VRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMRV 155 Query: 133 LLRQGSGTIVNVSSNATR-GIRRVP-YSAAKGGVNAMTTALAMEYGEQGIRVVATAPG-- 188 +L QGSG+I+N+SS A + GI Y A+K V +T + A+E G+RV A APG Sbjct: 156 MLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPGPV 215 Query: 189 GTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILFLASDEASY 248 TE R V G S + +A + R AT +E I+FLASD+ SY Sbjct: 216 ATEMLDRFV-----GGSEENKAGFLATIPA-------GRAATPDEIAQTIVFLASDKVSY 263 Query: 249 ITGTVLPVAAGD 260 +TG + V G Sbjct: 264 LTGQSIAVDGGH 275 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 22/255 (8%) Query: 10 FAGKVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSGFVADLET 69 +G+VA+VTGA++GI R +A +A G +V+ ++ ++ G G V D+ Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVND 65 Query: 70 YAGAQAAMAQAIARYGRIDILINGVG---GAIRMRPYDQFEAAQIDAEIRRSLMPTLYGC 126 A + A + + +G + IL+N G + MR D+ + D+ I +L Sbjct: 66 AARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDE----EWDSVIATNLTAVGRLS 121 Query: 127 HAVLPYLLRQGSGTIVNVSS--NATRGIRRVPYSAAKGGVNAMTTALAMEYGEQGIRVVA 184 AVL +++ +G I+N++S ++ ++ Y+AAK GV M+ ALA E G + I V Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 185 TAPGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILFLASD 244 APG D+ + +Q + + R E+ A + FLAS Sbjct: 182 IAPGFI-------------DTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASP 228 Query: 245 EASYITGTVLPVAAG 259 +ASYITGT L V G Sbjct: 229 QASYITGTTLHVNGG 243 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 77.4 bits (189), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 10/209 (4%) Query: 7 RARFAGKVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSGFV-- 64 +A GK A+VTG+ GI G+A +A +G ++L D + QA R G Sbjct: 3 KAPLHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVKCV 62 Query: 65 ---ADLETYAGAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMP 121 AD+ A +A MA A ++GR+DIL+N G + F + DA I +L Sbjct: 63 HHPADMSKPAEIEAMMAFAAQQFGRVDILVNN-AGIQHTETIEDFPVEKWDAIIAINLSS 121 Query: 122 TLYGCHAVLPYLLRQGSGTIVNVSS--NATRGIRRVPYSAAKGGVNAMTTALAMEYGEQG 179 + LP + + G I+N++S +++ Y AAK G+ +T A+E G Sbjct: 122 AFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTG 181 Query: 180 IRVVATAPGGTEAPPRRVPRNADGDSAQE 208 I A PG P V + D +A+E Sbjct: 182 ITCNAICPGWVLTP--LVQKQVDARAARE 208 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 28/256 (10%) Query: 13 KVAVVTGAAQGILRGVALGIAAEGGQVLLVDRADFIDEVAAQAEAGRGSGFVADLETYAG 72 K ++TGA I G+ A G +++ D D AQA + D+ A Sbjct: 8 KTIIITGAGGNIGHAYCDGLVAAGANIVMADLQDL--SAQAQAYGQQAIAMKIDVSDPAS 65 Query: 73 AQAAMAQAIARYGRIDILINGVG-------GAIRMRPYDQFEAAQIDAEIRRSLMPTLYG 125 + Q A +GRID +IN G G+ P D+++ + +R + Sbjct: 66 IEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCY-EINVRGVWLC---- 120 Query: 126 CHAVLPYLLRQGSGTIVNVSSNA-TRGI-RRVPYSAAKGGVNAMTTALAMEYGEQGIRVV 183 C AV PY+ QGSG I+NVSSN +G+ + Y ++K + +T +LA E G I+ Sbjct: 121 CRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNIQ-- 178 Query: 184 ATAPGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAPILFLAS 243 P +P D D +Q A ++ + +R T + + LFL S Sbjct: 179 -----ANTLCPDLIP---DADILAKQG--SVADERTIAGRCLQRSQTPHDMVGAALFLLS 228 Query: 244 DEASYITGTVLPVAAG 259 D + +ITG L V G Sbjct: 229 DGSDFITGQSLLVNGG 244 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 72.4 bits (176), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 115/263 (43%), Gaps = 28/263 (10%) Query: 10 FAGKVAVVTGAAQGILRGVALGIAAEGGQVLLVDR-ADFIDEVAAQAE-AGRGSGFVA-D 66 F+ KVA+VTG GI + VA + G V++ R A + VA + + +G F A D Sbjct: 4 FSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFHAGD 63 Query: 67 LETYAGAQAAMAQAIARYGRIDILINGVGGAIRMRPYDQFEAAQIDAEIRRSLMPTLYGC 126 + A A A + A +G +DILIN G R + + + E A+ D + L + Sbjct: 64 IAQPATATALVDLAKQAFGGVDILINN-AGVFRPKAFLEVEEAEYDWFLDTILKGKFFMA 122 Query: 127 HAVLPYLLRQGSGTIVNVSS-NATRGIRRVP---YSAAKGGVNAMTTALAMEYGEQGIRV 182 A + +G G IV S A + I P YSAA GV+A+T LA+E IR+ Sbjct: 123 QAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNIRI 182 Query: 183 VATAPGGTEAPPRRVPRNADGDSAQEQAWMQQAVQQVTSSTFFKRYATLEEQIAP----- 237 APG E P D A A F + L P Sbjct: 183 NTVAPGVVETPVYNTFMTDDQVKATLPA--------------FNAFHPLGRNGQPADVAE 228 Query: 238 -ILFLASDEASYITGTVLPVAAG 259 ILFLAS AS+ITGTVL V G Sbjct: 229 AILFLASANASWITGTVLSVDGG 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 558,148 Number of extensions: 20525 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 17 Length of query: 262 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 181 Effective length of database: 921,564 Effective search space: 166803084 Effective search space used: 166803084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)