BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1123.p (317 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 144 1e-35 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 119 2e-28 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 93 2e-20 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 85 7e-18 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 76 3e-15 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 5/292 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +++RQL++FV VA +F RA+ +LH+ QPPLS+ IQ LE LGVQL R SR + LT A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G +A +IL + L ++ LS+ FV++ Y LP +R+ R+ YP+V Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 121 DIQLLELTSMQQFAALKSGRIDIGFGRIRGNDAT---VARTVLREERLVLAIPPAFPLAT 177 +I L E T+ Q L GRID+G D + + E L+LA+P Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 178 SQQRVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVREIQTALGLVAAE 237 +Q V+L+ + LI++P+ P+F D IL+ D + P E ++QT +GLV+A Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 238 SGLCLIPASAR--LRNDLHYRLIDDTRATSPIILTHRINDNAWYIDAVKQLV 287 G+ L+P S R + Y+ + D + R ++ + ++A +L+ Sbjct: 243 MGIALVPQSVSNLKRPGVDYKALADKTPLVETGMAWRRDNTSPVLNAFLELL 294 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 5/277 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +D+R L+YFV VA + T+A++++ I QPPLS+QI+ LE+ELGV L R R + LTE+ Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVAS-TLYGGLPMLVRKLRQHYPE 119 G+ A IL +++ ++I L + L++GF S L+ +P ++R RQ P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 120 VDIQLLELTSMQQFAALKSGRIDIGFGRIR-GNDATVARTVLREERLVLAIPPAFPLATS 178 V + + E + + L+ R+D+ F R G+ A + + E +++A+P LA Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 179 QQRVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVREIQTALGLVAAES 238 ++ + L L I+ + P D +++ P V E ++ + L LVAA Sbjct: 184 RKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAAGL 243 Query: 239 GLCLIPASAR---LRNDLHYRLIDDTRATSPIILTHR 272 G+ ++PAS R L+ ++ +L +P+ L +R Sbjct: 244 GVSIVPASMRHVQLKEVVYLKLEQAPDLRAPLHLAYR 280 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 25/257 (9%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++R L+YF+A A +++FTRASE LHI QP LS QI+ +E+ELG+QL R R ++LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GRMF----------YEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLV 110 G +F + L LN L+ LKH ++ G ++S LP ++ Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHG----------RVTFGVLSSFGTFHLPPIL 110 Query: 111 RKLRQHYPEVDIQLLELTSMQQFAALKSGRIDIGFGRIRGNDATVARTVLREERLVLAIP 170 + YP + I +L L S + L G + G + + L L L + Sbjct: 111 ADFNKVYPGIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVG 170 Query: 171 PAFPLATSQQRVSLKELHGQKLIVYPKEPRP-SFADHILSLLNDQDIQPAEVHEVREIQT 229 PL S ++L EL+ +L++ E D IL L N I P V E+ I+ Sbjct: 171 DHHPLVGSAG-ITLNELNEHELVMLSDEYNSRKMMDAIL-LAN--GITPRIVMEMNAIEP 226 Query: 230 ALGLVAAESGLCLIPAS 246 L V S ++ A+ Sbjct: 227 ILATVRHSSLATILSAN 243 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 84.7 bits (208), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 19/286 (6%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 D+ L+ VA+A+ + ++A+ IA S +++ E+ G+ L R++ + LT A Sbjct: 3 FDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPA 62 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 GR+ ++A +L + LK + + +R TL + LP + YPE+ Sbjct: 63 GRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYPEI 122 Query: 121 DIQLLELTSMQQFAALKSGRIDIGFGRIRGNDAT--VARTVLREERLVLAIPPAFPLATS 178 D+QL+E S A++SG +++G + GN AT V R ++LVL +P LA Sbjct: 123 DLQLVEHKSADVLLAVQSGEVEVGV--LDGNLATSDVIPLPFRHDKLVLLVPSGHALA-E 179 Query: 179 QQRVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVR--EIQTALGLVAA 236 + V LK+ G + P E + + Q+ +P V VR LVA Sbjct: 180 RPSVQLKDALGFAFVCLPPE---RAMQRFIEEMAVQNSRPLRV-RVRAPSFYAIAQLVAE 235 Query: 237 ESGLCLIPASARLRN----DLHYRLIDDTRATSPIILTHRINDNAW 278 ++G+ ++P +A LR+ +H ++D AT + RI AW Sbjct: 236 QAGIAMLPEAAALRHIRELPVHMVALEDAWATREL----RICIRAW 277 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 16/247 (6%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MD++ L+ FVAVA T +F A+E+ H Q ++ I+ LE+E+G QLI R + P R + A Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGT-PARPSSA 59 Query: 61 GRMFYEQALQILNRLDQLKHATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 G A +++ D+ + ++ +L +G + +T LP L+ +PEV Sbjct: 60 GFALMAYAERMIQAHDEALALFKNGEVS--GSLRVGAMETTTALRLPPLLTLFHASHPEV 117 Query: 121 DIQLLELTSMQQFAALKSGRIDIGF--GRIRGNDATVARTVLREERLVLAIPPAFPLATS 178 D++L + + A L GR D F G++ N REE ++++ P + ++ Sbjct: 118 DLKLTTGPTAKLVAGLNEGRFDCVFIAGKLE-NPRLYQYKAYREELVLVSASPMKSMPSA 176 Query: 179 QQ-RVSLKELHGQKLIVYPKEPRPSFADHILSLLNDQDIQPAEVHEVREIQTALGLVAAE 237 R S + GQ S+ + LL D + + + + + LG V A Sbjct: 177 DTLRASTFLVFGQGC---------SYRQRVDVLLADSGVFSSRMVDFGSLDAILGCVGAG 227 Query: 238 SGLCLIP 244 G L+P Sbjct: 228 MGYALMP 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 650,666 Number of extensions: 24056 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 28 Length of query: 317 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 234 Effective length of database: 914,170 Effective search space: 213915780 Effective search space used: 213915780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)