BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1120.p
         (419 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982917|ref|YP_001352696.1| hypothetical protein mma_1006 [...   340   1e-94

>gi|152982917|ref|YP_001352696.1| hypothetical protein mma_1006
           [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  340 bits (872), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 10/419 (2%)

Query: 1   MSHLVATPIGKKRRNGTEFQKRGASGAVPSVLRHFEPHQMAALRLWVDADESKQHKRKRL 60
           M  L+  P G   RN  +   R A   VP  L   +     AL  W  +D ++   R  L
Sbjct: 21  MQELLLLPKG---RNARDLCSRNA---VPLTLPLLDAEHKTALLRWARSD-AQTRTRAAL 73

Query: 61  LEIAMKKIEGFRLEDGDLLVEHLLHDGWVICTEFRKPGCKWQWVSLAWRDLTKLQSLLGV 120
           L+ A  +  G  +E  + L + LL +GW+   E +  G  W W S+ WRDL +LQ+LLG+
Sbjct: 74  LKEA--QTSGITIEKAEHLCDKLLVNGWITRRE-QLTGGNWLWESVTWRDLLRLQNLLGL 130

Query: 121 SGTLERQQQRQTQLAQAKEQLIARFDSFAQGDTDPYLNDELAQAIEALEKAKSLTLEALK 180
           S   +R Q RQ ++ +  E L AR  +      DP L DEL++++  LE+ K L LE L 
Sbjct: 131 SNASQRLQARQAKITEIVEWLDARRITTTTSVLDPDLLDELSRSVTELEQDKMLRLEVLD 190

Query: 181 RRLDLMFQVAHWRDSGQQGMRQDFALSVRDGTKAIEANEWKWLDTVFDLERLGISRFAQT 240
            RL L+  VA W D+ QQG R++FAL  RD TK++ A EW WL++ FDLERLGI+RFAQ 
Sbjct: 191 SRLSLLKAVASWHDNQQQGSRRNFALHARDTTKSLSAAEWHWLESTFDLERLGIARFAQV 250

Query: 241 AWLAGEVELCWSNRKMELSAVHFLGIPVEDMQHLERLEGVQQWWLIENRTSFERNARKLP 300
           AWLAG++EL W   K++L+ +H LG+P++D+Q L+ +  +++WWLIENR SFE+ A ++ 
Sbjct: 251 AWLAGDIELIWGKHKVDLAPLHCLGLPLDDLQKLDTVSSLERWWLIENRASFEKQAGQIK 310

Query: 301 HGTLLLWMPGRPSLGWQAMMAHLLTKAPCPAWISADADPAGVDIACAVGRLWEQAGLTWE 360
            G +L+WMPGRPS  W   M++LL  AP  AWISADADPAGVDIAC VG+LWE+ G TWE
Sbjct: 311 KGVVLIWMPGRPSHAWMLAMSNLLRLAPATAWISADADPAGVDIACGVGQLWEKQGSTWE 370

Query: 361 AHKMSSVELTQTKQKWDLTPRDRLLLQNLLARQALPATLRSLCETMQREDRKAEQEAWL 419
            H M   +   T Q+W L   DR LL  LLA++ L  TLR+LCE M RE RKAEQEAWL
Sbjct: 371 PHLMGVEQWEATLQRWPLNDHDRRLLSFLLAKENLEPTLRALCEAMMREGRKAEQEAWL 429


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 981,044
Number of extensions: 38192
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 333
Effective length of database: 903,079
Effective search space: 300725307
Effective search space used: 300725307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)