BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1119.p
         (189 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982918|ref|YP_001352697.1| hypothetical protein mma_1007 [...   277   3e-76

>gi|152982918|ref|YP_001352697.1| hypothetical protein mma_1007
           [Janthinobacterium sp. Marseille]
          Length = 936

 Score =  277 bits (709), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/145 (90%), Positives = 140/145 (96%)

Query: 40  VDLGALAGVVVSADLPHLDNDDAILRQAELKVSFNFDGKGEIGLNDGEASGGQQVIKSLI 99
           V+LG LAGV VSADLPHLDNDD +LR AELKVSFNFDGKG+IGLNDGEASGGQQVIKSLI
Sbjct: 788 VELGLLAGVEVSADLPHLDNDDDVLRHAELKVSFNFDGKGDIGLNDGEASGGQQVIKSLI 847

Query: 100 LLVGLLKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHNVEVFEPA 159
           LLVGLLKD+D+PGGFVFIDEPFAHLDVRNIQLVG+FLKST+AQYVLTTPITHNVEVFEPA
Sbjct: 848 LLVGLLKDEDVPGGFVFIDEPFAHLDVRNIQLVGHFLKSTKAQYVLTTPITHNVEVFEPA 907

Query: 160 DVTLVTSKKPREARWAPPIGVLQRR 184
           D+TLVTSKK R+ARWAPPIGVLQRR
Sbjct: 908 DITLVTSKKLRDARWAPPIGVLQRR 932


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 453,921
Number of extensions: 18847
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 111
Effective length of database: 932,655
Effective search space: 103524705
Effective search space used: 103524705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)