BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1116.p
         (452 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983442|ref|YP_001352699.1| hypothetical protein mma_1009 [...   625   e-180

>gi|152983442|ref|YP_001352699.1| hypothetical protein mma_1009
           [Janthinobacterium sp. Marseille]
          Length = 409

 Score =  625 bits (1611), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 318/408 (77%), Positives = 360/408 (88%), Gaps = 3/408 (0%)

Query: 41  LAWGLGQRLDVLDALRGLVSGGQAAARLRIWMFLELAAQPQGRLQREDLNQLFYALKPEA 100
           LAWGL Q LDVLDALRGL+SGG AAARLR+W+FLEL AQPQGRL R+DLNQ+FY+LKPEA
Sbjct: 2   LAWGLSQHLDVLDALRGLLSGGHAAARLRVWVFLELTAQPQGRLLRDDLNQIFYSLKPEA 61

Query: 101 MDAALKRLRDLGLLVWDATDQDYQLSPIAQQVQALLAPLTRAVGEDDEMAALLAQVAGAQ 160
           +DA LKRLR+L LLVWD+T QDY LS +A QVQALLAPLTRA  EDDEMA+LLAQVAGAQ
Sbjct: 62  LDAVLKRLRELTLLVWDSTSQDYFLSSLALQVQALLAPLTRASSEDDEMASLLAQVAGAQ 121

Query: 161 ALGLSDASQIRHLHAQLARLHDQFADAIESGSEALLRQAQPRFERALKLVNRAGEALTAL 220
           ALGLSDASQIRHLHAQLARL+D+FADAI SGSEA LR+AQPRFERALKLV RAGEALTAL
Sbjct: 122 ALGLSDASQIRHLHAQLARLYDEFADAIASGSEARLREAQPRFERALKLVGRAGEALTAL 181

Query: 221 IRSEHADARLEREARALGNGQARLLTMASQFTRALQQADRQRVTLGSTGVTSSDVRRWLQ 280
           IRSEH DARLEREARALGNGQARLL+MASQFTRALQQADRQRVTLGSTGVTSSDVR+WLQ
Sbjct: 182 IRSEHGDARLEREARALGNGQARLLSMASQFTRALQQADRQRVTLGSTGVTSSDVRQWLQ 241

Query: 281 AHPDLCSLMGEALSIGVKPVFVSGHELLDVAEGELERDRPDAQRSQGLPPPAQAVEGKIE 340
           ++  L +L+G++LSIGV+P+FVSGHEL+DVAEGE ERDRP+ +RS+GLPPP+QA  G++E
Sbjct: 242 SYSSLPTLLGDSLSIGVQPIFVSGHELVDVAEGEFERDRPNPRRSEGLPPPSQAAAGEVE 301

Query: 341 ALRMPAELGELIEQLTRLGALPEGVESGEPQAQPLSTVVLGGSFGKAAYRLQLLPLLGDR 400
            L MP EL ELI QLTRLGALPEG  +    + PL  VVLGG F +AAYR+QLLPLLGD 
Sbjct: 302 VLSMPVELDELIAQLTRLGALPEGETA---NSLPLQEVVLGGRFSQAAYRMQLLPLLGDH 358

Query: 401 QAQTLQGQTGDLARLPWQVGFLPRVEKIDDPDVAAMSAGAVHPDPSRE 448
           Q++TL+GQTGDLARLPWQ  FLP VE++DDP V A+S GA+HPD SRE
Sbjct: 359 QSRTLKGQTGDLARLPWQASFLPAVERVDDPSVFALSLGALHPDISRE 406


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,033,641
Number of extensions: 42951
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 366
Effective length of database: 903,079
Effective search space: 330526914
Effective search space used: 330526914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)