BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1106.p
         (771 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981330|ref|YP_001353393.1| Rad3-related DNA helicases [Jan...   748   0.0  

>gi|152981330|ref|YP_001353393.1| Rad3-related DNA helicases
           [Janthinobacterium sp. Marseille]
          Length = 622

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/619 (58%), Positives = 455/619 (73%), Gaps = 9/619 (1%)

Query: 146 VLEEERSSEELASLFAGQCERFVHWAEQELAHRAARDAALQALRFPYGDFRPGQRQLAEA 205
           +L E+ S+E L   F   CERFV WAEQE  HR  RD AL  L FP+  FRPGQR LAE+
Sbjct: 1   MLAEKYSAEALELHFDQLCERFVAWAEQEAQHRLVRDKALTELNFPHAGFRPGQRHLAES 60

Query: 206 VFRAHRGRRSLLAQAPTGIGKTLGTLFPALKAAPGERLDKILFLAAKTPGRQLALDAAAS 265
           V++A    R L+AQAPTGIGKT+ T+FP LKA+PG++LDKI FLAAKTPGR LAL++   
Sbjct: 61  VYKAALSGRHLMAQAPTGIGKTVATIFPLLKASPGQQLDKIFFLAAKTPGRGLALESIDL 120

Query: 266 LKGNGQ-----LPLRVLELCARDKACEYPDRLCRGDACPLAQGFYDRLPAARAACLTQPL 320
           ++   +     LPLRVLEL ARDKACE+PD+ C G++CPLA+GFYDR+ AAR A +    
Sbjct: 121 IRAGREPDAPLLPLRVLELVARDKACEHPDKACHGESCPLAKGFYDRIAAARQAAVQAGA 180

Query: 321 LDRQHLREVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMALAHDWRVSVLA 380
           LD+Q LR +AL H+VCPYYL  E+ RWSDV+VGDYNY+FD  AML+G+ + +DWRV+VL 
Sbjct: 181 LDQQSLRTIALAHEVCPYYLSQELVRWSDVVVGDYNYYFDVSAMLHGLTVENDWRVAVLV 240

Query: 381 DEAHNLVARARSMYSAQLSRASLRAARAVAPPSIAKPLEKLGRAWTAAGKKADLPYQVLE 440
           DEAHN+V RAR MYSA+L + S R AR  AP ++   L+++ R W    +  D  YQV  
Sbjct: 241 DEAHNMVERARKMYSAELDQGSFRFARKTAPKALKTVLDRVNRQWNELYRNQDDAYQVYH 300

Query: 441 APPPKFVDALSSSVGAISDYLAQVAVPLEAPLRDFYFDAMAFVRLAESFGPHSLLDLTRE 500
           +   KF+ AL  +   I+D + +    +   L+ FYFDAM F +LAE FG HS+ D+TR+
Sbjct: 301 SIAEKFLFALQQAGTDITDLMTEEPESVSPELQRFYFDAMQFSKLAEVFGEHSMFDITRD 360

Query: 501 DERNT----VLCIRNVVPAPFLGPRFALAHATTLFSATLAPWHYFADLLGMPASTAWIDV 556
            +        LCIRN+VPAPFL  RFA AH+TTLFSATL P H+++D+LG+P  TAWIDV
Sbjct: 361 TQTGNRVQATLCIRNIVPAPFLKQRFATAHSTTLFSATLGPHHFYSDMLGLPDDTAWIDV 420

Query: 557 DSPFHASQLQVRLAHDISTTWQRRAASIAPICALMARQFNERPGNYLAFFSSFEYLQQAH 616
           +SPF A QL VR+A  IST +Q R  S++PI  L+A Q+   PGNYLAFFSSF+YL+Q  
Sbjct: 421 ESPFIAQQLSVRIARTISTRYQHRTHSLSPIVNLIATQYASAPGNYLAFFSSFDYLKQVS 480

Query: 617 DALLRTHPEIPVWQQSRRMSEDDRDAFLARFEAGGQGIGFAVLGGSFGEGVDLPGRRLIG 676
           D  +  +P+IP WQQSR M+E ++++FLARF AGGQGIGFAVLGG+F EG+DLPG RLIG
Sbjct: 481 DLFIERYPDIPAWQQSRGMAEGEKNSFLARFNAGGQGIGFAVLGGAFAEGIDLPGDRLIG 540

Query: 677 AFVATLGLPQFNPVNEQLRQRMEALFGCGYDYTYLYPGMQKVVQAAGRVIRTESDQGTVW 736
           AFVATLGLPQ NPVNE++RQRM+ +FG GYDYTYLYPG+QKVVQAAGRVIRT+ DQG + 
Sbjct: 541 AFVATLGLPQVNPVNEEMRQRMDIIFGKGYDYTYLYPGLQKVVQAAGRVIRTQEDQGFIH 600

Query: 737 LIDQRFSRPEVRALLPAWW 755
           LID RF R +V  LLPAWW
Sbjct: 601 LIDDRFGRTDVMELLPAWW 619


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,834,642
Number of extensions: 76816
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 680
Effective length of database: 884,594
Effective search space: 601523920
Effective search space used: 601523920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)