BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1105.p
         (548 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982525|ref|YP_001353392.1| hypothetical protein mma_1702 [...   581   e-167

>gi|152982525|ref|YP_001353392.1| hypothetical protein mma_1702
           [Janthinobacterium sp. Marseille]
          Length = 551

 Score =  581 bits (1497), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/551 (54%), Positives = 375/551 (68%), Gaps = 6/551 (1%)

Query: 1   MPAVPDPRFYYLGNFQYVLEWLAQRYADLLSAQERDFIDIFPGLPLASRALLVRMMMRRG 60
           +P +PDP FYYL NFQ VL+W+ QRY+DLLS +ER FI+ FP LP +SRALLVRM+MR+G
Sbjct: 4   LPTLPDP-FYYLENFQRVLDWIGQRYSDLLSDEERSFIEQFPRLPQSSRALLVRMVMRKG 62

Query: 61  ERFRASKLCYPEIGCPLQAAQAL-PAGWIERDPLLSLAQLFELSTKPELLRMFDLSTTHK 119
           E FR+ KL Y EI CP  AA+ L    W+  +P LS+AQLF L  K EL++ F +S    
Sbjct: 63  EVFRSGKLAYAEIACPDAAARPLLELDWLRHNPPLSVAQLFALLRKAELVQAFRISAAGS 122

Query: 120 ASRKSELLALLASDPAHAELRPFSQWQGQGSDQVLQLHQQALCDRLRLMFFGNLRQDWSE 179
           A+RK +L   L    A  E R   QW    ++ + ++H  A+C+RLRLMFFGNL QDWSE
Sbjct: 123 AARKGDLQEKLQH--AFPEARTLEQWAPDITESIYEVHVTAICERLRLMFFGNLYQDWSE 180

Query: 180 FVLADLGTFRYERIALAPEARGFRSRADIDLYLQLHACKERYYAGEAAAVVLAALPTGRF 239
           FVL+DLG +RYE++  +  +RGFRSR DID YL L  C+ER+  G     ++  +PT  +
Sbjct: 181 FVLSDLGIYRYEQVEFSESSRGFRSRQDIDDYLHLQRCRERFDDGNYLDEIVPDIPTTPY 240

Query: 240 DNPWLESRRERLLFQLGQLLEKEGDWSQAHAVYAACRYPGARVRAIRVLEKQGRYGPAQA 299
            NPW+E RR +LLF+  Q  E+  +   A  +Y  C Y GAR R IRVLEK    G A  
Sbjct: 241 ANPWMEGRRNKLLFRFAQEYERCQELDSALKLYRQCSYAGARSRTIRVLEKNDAVGEALE 300

Query: 300 LLHTAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA--PGGLRVEL 357
           L   A   PE++AE Q +LR+ PRL R+LG    A G+AP +E  DL L      L VE 
Sbjct: 301 LAEAALSRPESEAEHQAVLRMLPRLRRKLGHAKLAPGKAPVIEAEDLSLPYPATALSVEQ 360

Query: 358 AVQAHLHEPEAPVFYVENALANTLFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFYAR 417
            VQAHL   EAPVFYVEN L N+LFGLLCW AIFAA+PGAFFHPF + P DL SADF  +
Sbjct: 361 MVQAHLSRCEAPVFYVENTLINSLFGLLCWPAIFAALPGAFFHPFHQGPVDLHSADFVQK 420

Query: 418 RRDVFQRCLAQLDDGSYRHAILATHDAKHGLQSPFVAWGWVTRELLVLALDCIPAAHLKL 477
           R+D+F +CLA+LDD SYR  I+ T  AK G+QSPFV WG +   LL LAL CIPAAHLK 
Sbjct: 421 RQDIFNQCLARLDDDSYRQTIVDTFAAKAGIQSPFVFWGTIDEVLLKLALHCIPAAHLKK 480

Query: 478 WCLRILDDVRENRAGFPDLVQFWPQQRRYRMIEVKGPGDRLQDNQLRWLDYCTRHAMPVS 537
           +  RIL D+  NR+G PDL+QFWPQ++RYRM+EVKGPGDRLQDNQ+RW++YC  H MPV+
Sbjct: 481 YFARILRDIPANRSGLPDLIQFWPQEQRYRMLEVKGPGDRLQDNQIRWINYCIEHQMPVA 540

Query: 538 VCYLQWEPAVA 548
           V Y+QW    A
Sbjct: 541 VTYVQWTEQAA 551


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,344,733
Number of extensions: 55709
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 460
Effective length of database: 895,685
Effective search space: 412015100
Effective search space used: 412015100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)