BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1100.p (307 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 81 1e-16 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 80 2e-16 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 71 7e-14 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 71 7e-14 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 64 2e-11 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 115/254 (45%), Gaps = 19/254 (7%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 +TL+QL AF A F +A+E L +S SSLS + +LE LG+ LFDR R L++A Sbjct: 3 ITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDA 62 Query: 61 GQALLPQAQALLDNAARVRATFAPSVGL-VGRCAFGVGELSALTWLPQFMVQVRARHPKL 119 G LLP AQ L + V + L GR G L A T +P + R+P + Sbjct: 63 GHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPGI 122 Query: 120 VLEPYVDVGAVLESRVAK----GELDFAIIAGRSSHYDILSQPLSQEQFIWVAAPALAVS 175 V V V E +V + G +D I +L+Q + ++++ A+ + Sbjct: 123 ----RVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKY------AVLMH 172 Query: 176 DDSQRVYSAVDLLQ---AGQPMIVLPPSAGSTRLIDDWLLEHGITAVERINCNNWGAIAG 232 + Q + Q A QP+++ PPS T L D L GIT + G Sbjct: 173 KEHQLMRKKTITWQDIAATQPILLKPPSLIRTYL-DQHLARVGITLTPAYEVALPWTMTG 231 Query: 233 MLIASVGIGILPAG 246 M+ A VG+ I+ G Sbjct: 232 MVRAGVGVAIVTTG 245 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 12/302 (3%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 +TL+QL AF A + F +A+ERLH++ S+LS I ELE L + LFDR L+E Sbjct: 3 LTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTEH 62 Query: 61 GQALLPQAQALLDNAARVRATFAPSVGLV-GRCAFGVGELSALTWLPQFMVQVRARHP-- 117 G+ L A+ +L SV GR A + A+T L FM + RHP Sbjct: 63 GEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHPGI 122 Query: 118 KLVLEPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAPALAVSDD 177 KL+L + ++ R+ G++DF++ + +I P+ + F+ + ++ Sbjct: 123 KLMLRDVAEES--IKKRLLNGDVDFSVGTQLNPESEISELPIFSDHFVLLMPKGHPLTKQ 180 Query: 178 SQRVYSAVDLLQAGQPMIVLPPSAGSTRLIDDWLLEHGITAVERINCNNWGAIAGMLIAS 237 ++ A+ + P+I + PS+ +++ L IT + I M+ Sbjct: 181 TRIPLQAI----SQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNG 236 Query: 238 VGIGILPAGWSQKLLDQNLLRPLAGGELPTSLTYSFQWRRGDNRPLLDPLRRLSTQCVDF 297 +GI ILPA Q Q ++ G T +FQ R NR L T+ +++ Sbjct: 237 MGITILPANAHQLTSTQGIVVRNFGKSNFTRTVCTFQLR---NRSLSPAAELFHTELLEY 293 Query: 298 TI 299 + Sbjct: 294 VV 295 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 33/302 (10%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 + L+QL F A +FG A+ RLH++ LS+ I LE LG+ LF R+ L+ A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GQALLPQAQALLDNAARVRATFAPSV-GLVGRCAFGVGELSALTWLPQFMVQVRARHPKL 119 G ALLP+AQ +L A + + G GR + + + LP F+ + R +P++ Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 120 VLEPYVDVGAVLESRVAKGELDFAIIAG--------RSSHYDILSQPLSQEQFIWVAAPA 171 ++ V +A+G +D ++ + + +LS+PL + V Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPL----ILAVPKGL 178 Query: 172 LAVSDDSQRVYSAVDLLQAGQPMIVLPPSAGSTRLIDDWLL----EHGITAVERINCNNW 227 AV AV A P+I+ P D +L + G+T Sbjct: 179 KAVRGKQTVALQAV----AELPLIIFPRRIAPA--FHDAILACYRDAGLTPHIGQEAIQM 232 Query: 228 GAIAGMLIASVGIGILPAGWSQKLLDQNLLRP----LAGGELPTSLTYSFQWRRGDNRPL 283 I G++ A +GI ++P S NL RP A + + WRR + P+ Sbjct: 233 QTIIGLVSAGMGIALVPQSVS------NLKRPGVDYKALADKTPLVETGMAWRRDNTSPV 286 Query: 284 LD 285 L+ Sbjct: 287 LN 288 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 97/220 (44%), Gaps = 9/220 (4%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 M L+ L F AA +F ASE LH++ +LS +I ++E LGI LFDR G L+ A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GQALLPQAQ-ALLDNAARVRATFAPSVGLVGRCAFGVGELSALTWLPQFMVQVRARHPKL 119 G+ A+ ALL+ A + A GR FGV LP + +P + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 120 VLEPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAPALAVSDDSQ 179 + +E R+ G+L F + SS I +PL + AL V D Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPL------FTVPLALVVGDHHP 174 Query: 180 RVYSAVDLLQA--GQPMIVLPPSAGSTRLIDDWLLEHGIT 217 V SA L +++L S +++D LL +GIT Sbjct: 175 LVGSAGITLNELNEHELVMLSDEYNSRKMMDAILLANGIT 214 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 2/171 (1%) Query: 1 MTLKQLEAFYWAATCANFGIASERLHLSISSLSKRISELELSLGISLFDRSGHRAMLSEA 60 MTL +L+ A +FG A+E ++ +LS I +LE LG++LF+R G ++ Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GQALLPQAQALLDNAARVRATFAPSVG-LVGRCAFGVGELSALTWLPQFMVQVRARHPKL 119 G ++ QA+ +L+ A ++ + LVG G+ A LP + + R P++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 120 VLEPYVDVGAVLESRVAKGELDFAIIAGRSSHYDILSQPLSQEQFIWVAAP 170 L + L + +GELD AI+A +L QP+ E F+ VA P Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFV-VAVP 186 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 613,244 Number of extensions: 23186 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 10 Length of query: 307 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 224 Effective length of database: 914,170 Effective search space: 204774080 Effective search space used: 204774080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)