BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1098.p (437 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 244 9e-66 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 236 1e-63 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 197 9e-52 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 173 2e-44 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 162 4e-41 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 244 bits (622), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 230/389 (59%), Gaps = 9/389 (2%) Query: 14 SKKRLRKVAAATIVGSMLEWYDFYLYATMASIVFSKIFFDVSEPATASLQAFATFAIGFV 73 K+++R V A+ +G+++EWYDF +Y A++VF+K+FF +P +L A ++A+GF+ Sbjct: 17 EKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSYAVGFL 76 Query: 74 ARPIGGLFFGYFGDRYGRKRMLFVTFCMMGLCTTAIGLLPSYAVIGVWSPLCLVLIRIVQ 133 ARP+GG FG++GDR GRK +L +T +MG+ T IGLLP+Y IG+W+P+ L+ +RI+Q Sbjct: 77 ARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRIIQ 136 Query: 134 GLGAGAELAGAAVTSYEHAAENKKGRQGAWPALGLNLGLLLSSLTVYLLTVNGEQFLLAG 193 G+G G E GAAV EH+ +N++G G+ +G LGL++++L ++ E +L+ Sbjct: 137 GIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFVSKMPEADILSW 196 Query: 194 GWRIPFLLSFFLVLIGLWVRRSLPETPAYQHAG-ETHRHKRPFRELWNTNVKGLAVVFFV 252 GWRIPFLLS L+++G+++R+++ E+P ++ K P ++ + + FF+ Sbjct: 197 GWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPR----TFFI 252 Query: 253 AVGYN----ALSYIFKTFSLAYLTQFKGISASVTSLSVTLASLVAIFSVPLFGYLCDRFS 308 A+G + Y+ F + Y T G+ S+ ++ +A++V I ++PLFGYL D Sbjct: 253 AIGLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSDVIG 312 Query: 309 SKKVLIAGGVLSGLFAYPFMHLLATGDNVHIYLALIIGTGVLAPMMFAPQGSFLSRQFTV 368 + + G + + FA+P + + L +++ + +MFAP+ ++ F Sbjct: 313 RRPLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFGA 372 Query: 369 QSRSTGVGSAREIGTALAGGIAPLWALSL 397 R +G ++ A+ GG++P+ A +L Sbjct: 373 NVRYSGASFGFQVAAAIGGGLSPIIATAL 401 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 236 bits (603), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/409 (34%), Positives = 227/409 (55%), Gaps = 1/409 (0%) Query: 14 SKKRLRKVAAATIVGSMLEWYDFYLYATMASIVFSKIFFDVSEPATASLQAFATFAIGFV 73 K ++ +AAA+ +G+++EWYDF +Y A++VF+K+FF P +L A T+A+GF Sbjct: 17 KKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFF 76 Query: 74 ARPIGGLFFGYFGDRYGRKRMLFVTFCMMGLCTTAIGLLPSYAVIGVWSPLCLVLIRIVQ 133 ARP+GG FG+FGDR GRK ML +T +MG+ T IG LP+Y IG+W+P+ L+++R +Q Sbjct: 77 ARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQ 136 Query: 134 GLGAGAELAGAAVTSYEHAAENKKGRQGAWPALGLNLGLLLSSLTVYLLTVNGEQFLLAG 193 G+G G E GAA+ EHA ++++G G+ +G LGL+L++ +++ E L+ Sbjct: 137 GVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGVFAIVSKLPEADFLSW 196 Query: 194 GWRIPFLLSFFLVLIGLWVRRSLPETPAY-QHAGETHRHKRPFRELWNTNVKGLAVVFFV 252 GWRIPFLLS LV++G +R + E+P + Q + K+P + N + + Sbjct: 197 GWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGL 256 Query: 253 AVGYNALSYIFKTFSLAYLTQFKGISASVTSLSVTLASLVAIFSVPLFGYLCDRFSSKKV 312 + + YI F + + T + S+ + A+LV + ++PLFG L D+ + + Sbjct: 257 KISEVSWVYILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRRPM 316 Query: 313 LIAGGVLSGLFAYPFMHLLATGDNVHIYLALIIGTGVLAPMMFAPQGSFLSRQFTVQSRS 372 I G + + A+P LL T D+ I +I+ + MFAP+ ++ F R Sbjct: 317 YIWGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANVRY 376 Query: 373 TGVGSAREIGTALAGGIAPLWALSLVARSAVHDTNGVALILACAGILVA 421 +G ++ A+ GG++P+ A L+A V LIL A LVA Sbjct: 377 SGATLGFQVAAAIGGGLSPIIATGLMAYFGGTTGVSVMLILLAAITLVA 425 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 197 bits (502), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 202/401 (50%), Gaps = 5/401 (1%) Query: 7 EHETSTQSKKRLRKVAAATIVGSMLEWYDFYLYATMASIVFSKIFFDVSEPATASLQAFA 66 + ++ K V A+++G+ +E++DFY+YAT A +VF +FF S P LQ+ A Sbjct: 3 DRNAGSEKKNSPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLA 62 Query: 67 TFAIGFVARPIGGLFFGYFGDRYGRKRMLFVTFCMMGLCTTAIGLLPSYAVIGVWSPLCL 126 TFAI F ARP+G FG++GDR GRK L MG+ T IGLLP+Y IG +PL L Sbjct: 63 TFAIAFFARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLL 122 Query: 127 VLIRIVQGLGAGAELAGAAVTSYEHAAENKKGRQGAWPALGLNLGLLLSSLTVYLL--TV 184 L R QGLG G E GA + + E+A K G +P LG LG LS LL T+ Sbjct: 123 ALCRFGQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETL 182 Query: 185 NGEQFLLAGGWRIPFLLSFFLVLIGLWVRRSLPETPAYQHA-GETHRHKRPFRELWNTNV 243 EQF + GWRIPF+ S LVL+GL+VR + ETP +Q + R K P ++ + Sbjct: 183 TNEQF-FSYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHS 241 Query: 244 KGLAVVFFVAVGYNALSYIFKTFSLAYLTQFKGISASVTSLSVTLASLVAIFSVPLFGYL 303 + L + +A L Y+ F+L++ T G + + A + ++P+ L Sbjct: 242 RVLVLGTIIATATFVLFYLMTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALL 301 Query: 304 CDRFSSKKVLIAGGVLSGLFAYPFMHLLATGDNVHIYLALIIGTGVLAPMMFAPQGSFLS 363 D++ + +I + LF + + D + + L +G ++ M + P G+ LS Sbjct: 302 ADKYGRRITMILVSIAIMLFGFLISPMFVAHDAIGVTFFLSLGLALMG-MTYGPLGTMLS 360 Query: 364 RQFTVQSRSTGVGSAREIGTALAGGIAPLWALSLVARSAVH 404 F + R TGV +G + +AP A L +H Sbjct: 361 ELFPTEIRYTGVSLTFNLGGIVGASLAPYAATWLATNYGLH 401 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 8/331 (2%) Query: 19 RKVAAATIVGSMLEWYDFYLYATMASIVFSKIFFDVSEPATASLQAFATFAIGFVARPIG 78 RKV A+ +G++ EWYDFYLY ++A+I+ +K FF ++P TA + A FA GF+ RP G Sbjct: 16 RKVIFASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAFIFALLAFAAGFIVRPFG 74 Query: 79 GLFFGYFGDRYGRKRMLFVTFCMMGLCTTAIGLLPSYAVIGVWSPLCLVLIRIVQGLGAG 138 + FG GD GRK VT +MG T +GLLP+YA IG+ +P+ L+++RI+QGL G Sbjct: 75 AIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIILRILQGLALG 134 Query: 139 AELAGAAVTSYEHAAENKKGRQGAWPALGLNLGLLLSSLTVY-LLTVNGEQFLLAGGWRI 197 E GAA EHA K+G +W +GL +S L + T GE+ GWRI Sbjct: 135 GEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTAMGEEAFADWGWRI 194 Query: 198 PFLLSFFLVLIGLWVRRSLPETPAY-QHAGETHRHKRPFRELW----NTNVKGLAVVFFV 252 PFL+S FL+ I +W+R S+ E+PA+ + E K P E + N + LA++ Sbjct: 195 PFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWGNLKIVILALIGLT 254 Query: 253 AVGYNALSYIFKTFSLAYLTQFKGISASVTSLSVTLASLVAIFSVPLFGYLCDRFSSKKV 312 A G + Y + ++L +LTQ + ++ + + L+A +FG L D+ K + Sbjct: 255 A-GQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPFFVIFGSLSDKIGRKPI 313 Query: 313 LIAGGVLSGLFAYPFMHLLATGDNVHIYLAL 343 ++AG +++ L +P + L N + AL Sbjct: 314 IMAGCLIAALTYFPIFNALTHYANPALEAAL 344 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 162 bits (410), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 170/334 (50%), Gaps = 9/334 (2%) Query: 9 ETSTQSKKRLRKVAAATIVGSMLEWYDFYLYATMASIVFSKIFFDVSEPATASLQAFATF 68 E + K R+V A+ +G++ EWYDF++Y ++A I S + F P A L + Sbjct: 10 EADVFTAKEERQVVLASTLGTIFEWYDFFIYGSLA-IFMSSVLFPPDNPTAALLASLGAL 68 Query: 69 AIGFVARPIGGLFFGYFGDRYGRKRMLFVTFCMMGLCTTAIGLLPSYAVIGVWSPLCLVL 128 A GFV RPIG + FGY GDR GRK +T MMG T IG LPSYA +G + + LV+ Sbjct: 69 AAGFVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVV 128 Query: 129 IRIVQGLGAGAELAGAAVTSYEHAAENKKGRQGAWPALGLNLGLLLSSLTVY--LLTVNG 186 +R+VQGL G E GA + EH+ +++G W + ++GL+LS + T++ Sbjct: 129 LRLVQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDM 188 Query: 187 EQFLLAGGWRIPFLLSFFLVLIGLWVRRSLPETPAYQHAGETHR-HKRPFREL---WNTN 242 F GWR+PF++S +++ ++VR L E+P + R K P R+ W + Sbjct: 189 ASF-KEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKWPSL 247 Query: 243 VKGLAVVFFVAVGYNALSYIFKTFSLAYLTQFKGISASVTSLSVTLASLVAIFSVPLFGY 302 L +F V G A + + + + +L Q + + + L+ + FG+ Sbjct: 248 KMILLALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAPAFVFFGW 307 Query: 303 LCDRFSSKKVLIAGGVLSGLFAYP-FMHLLATGD 335 L DR K +++AG ++ L P F LL G+ Sbjct: 308 LSDRLGRKWIMMAGLFIAALCYRPMFASLLEAGN 341 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 915,676 Number of extensions: 35490 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 7 Length of query: 437 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 351 Effective length of database: 903,079 Effective search space: 316980729 Effective search space used: 316980729 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)