BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1094.p (306 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982794|ref|YP_001355028.1| LysR family transcriptional reg... 135 3e-33 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 91 1e-19 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 88 5e-19 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 80 2e-16 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 79 3e-16 >gi|152982794|ref|YP_001355028.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 1/291 (0%) Query: 9 LEETAVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAA 68 L E + Y E ++RG++ AA LN+A SA+SRQ++ LE+ L L ER +RG++P A Sbjct: 5 LNEARLVYLFESIQRGTMRAAADALNIAPSAVSRQVALLEEELGIALIERHTRGIKPTEA 64 Query: 69 GELLAAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGI 128 G+LL+ + V EL L+GLR+G +++ EGF + + +A+F ++ I Sbjct: 65 GKLLSQYFREQHSHKADVLAELQELRGLRKGTIRIVLGEGFVSDMMAGPLAKFGADYKDI 124 Query: 129 RFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRK- 187 L VG + + V E D+GL PD I + PI AV+ PD L + Sbjct: 125 SVVLDVGGTNEIMRRVSEDEADMGLIMNPPPDSKIVSRKYSRQPIYAVVGPDFPLLNKPG 184 Query: 188 RVSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGF 247 + + YP+ + +R+++ + L+P L+ +S L FV GV F Sbjct: 185 PFEIKDFLPYPMALNHTTFGLRQILQLVEQTEQIRLKPKLTTNSFYILRQFVRLQMGVTF 244 Query: 248 SAQIPIREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTL 298 + L + +L +P+K M + + SGR L AA L + Sbjct: 245 LPSFVVSSELASGELFTIPVKHPIMENAEAHLITRSGRKLSSAANKMLQYM 295 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 110/231 (47%) Query: 9 LEETAVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAA 68 +E +RYFL + S T A+ +L++ +S QI ++ED L LF+R+ R ++ A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 69 GELLAAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGI 128 GEL +A R LE + + L L+ L+ G V F +P +A F + + GI Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 129 RFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKR 188 + + + + + + +G + G+ + + I VE P+ V+ H L G Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAG 180 Query: 189 VSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFV 239 ++L+EL ++ L M R+++DA + + + ++I +L+ V Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATV 231 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 8/290 (2%) Query: 14 VRYFLEVVRRG-SITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRP-NAAGEL 71 +R+ E +R ++TE A L + S +S+QI LED L LF R + + AG+ Sbjct: 6 LRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVTRAGDG 65 Query: 72 LAAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFH 131 R+ LE E + + G+ G++ +A T A +P + QF ++ Sbjct: 66 AVEIVKRILLETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFPKVKLE 125 Query: 132 LSVGNAKSVAQLVREGTVDLGL-TFMLAPDPDIKVE--FSQKAPIMAVMHPDHVLAGRKR 188 L G VA ++ G D+G+ + +L PDI FS ++ + H L + Sbjct: 126 LHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPL--GHPLTKKAP 183 Query: 189 VSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFS 248 V+L ++AQYPL T R+ +DA S++ +V + L+A + ++V G GVG Sbjct: 184 VTLEDIAQYPLITYNPQFTGRKCVDAAFSQAGLVPDFRLTAMDADVIKTYVERGLGVGIV 243 Query: 249 AQIPIREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTL 298 A++ + + + L + + + + +G LP A FL T Sbjct: 244 AEMAL-DGIEKIGLTVLETEGTLFGSCTTLVAVRNGTFLPSFAYRFLETF 292 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 4/292 (1%) Query: 14 VRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELLA 73 ++ F V R S + AA L++ A+S Q+ +LE+ LFE++ + + G L Sbjct: 9 LKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGSELL 68 Query: 74 AHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHLS 133 ++ + + + + + KG+ G++ +A F P + +F H+G+ +LS Sbjct: 69 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISA-GDYFFPRLLVEFARSHQGVTLNLS 127 Query: 134 VGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLSE 193 V N + + + D+ + D D E P + V PDH L +K + +S Sbjct: 128 VHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKNIPMSR 187 Query: 194 LAQYPLGMPKK-NITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFSAQIP 252 L Q P + +K + T + D R N + A+ S + V++G GV F + Sbjct: 188 LMQEPFVVREKGSDTWHSMEDGFGDRINDI-NVAMEIRSTETIKQAVIAGMGVSFLSAHT 246 Query: 253 IREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTLIDRASE 304 I L+ L + ++ + L I + LP A++F N L+D E Sbjct: 247 ISLELQAGSLAVLDVEGFPV-MLNWYIVHRKNKRLPPVAQAFKNFLLDEGPE 297 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 8/290 (2%) Query: 14 VRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELLA 73 +R F+ V G T AA L V+ S++S + LE+ L LF+R +R + AG L Sbjct: 8 LRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDAGHDLL 67 Query: 74 AHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHLS 133 A + ++ V L L++G V +A A +P + F R+ GIR + Sbjct: 68 PVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPGIRVIVE 127 Query: 134 VGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLSE 193 + V +L+ GTVD+G+ L D + + + +MH +H L +K ++ + Sbjct: 128 DVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMRKKTITWQD 187 Query: 194 LAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGF--SAQI 251 +A + K +R +D +R + L PA + V +G GV + + Sbjct: 188 IAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGVAIVTTGVL 247 Query: 252 PIREYLRTR-KLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTLID 300 P+ E + + ++ P+ ++++ L + +G L AA+S L++ Sbjct: 248 PVAERMGLELRTISAPVIERELAVL-----TRAGYPLSPAAQSLRTHLLE 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 593,978 Number of extensions: 21917 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 21 Length of query: 306 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 223 Effective length of database: 914,170 Effective search space: 203859910 Effective search space used: 203859910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)