BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1093.p (401 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980910|ref|YP_001353544.1| major facilitator transporter [... 69 4e-13 gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 67 2e-12 gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 60 3e-10 gi|152980367|ref|YP_001352036.1| major facilitator superfamily d... 59 7e-10 gi|152982869|ref|YP_001355198.1| major facilitator superfamily o... 55 8e-09 >gi|152980910|ref|YP_001353544.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 436 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 96/420 (22%), Positives = 178/420 (42%), Gaps = 39/420 (9%) Query: 3 SAVQTRIYKYAVLALL---YLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFL 59 + ++ IY L LL +L + +Y+DR + FA + ++ + GL FF+ Sbjct: 14 TKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGAGIFFI 73 Query: 60 GYSLLQLPGGWLADRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEGSFP 119 GY L ++P + + G+R I ++ WS+ + T + T VIRF G+ E F Sbjct: 74 GYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVAEAGFF 133 Query: 120 AASIKGVAEHFDKGERPKMSSVLMSSNYIGSMLAPVIIAPL---ILH--------FGWRN 168 + + F R +M+++ M IG +A V+ PL I++ GW+ Sbjct: 134 PGIVLYLTYWFPTSRRGRMNALFM----IGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQW 189 Query: 169 VFHY-------IGIVGIIF-----AVAYWLC--VRPLSERTDGGKRPVNSK--TISELMR 212 +F +GI+ + + + WL + + E V K +++ + Sbjct: 190 LFLLEALPSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGDKSHSVAGVFT 249 Query: 213 LPLMWQLVAVWFGLSVVNKGLDSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGISTAIGGW 272 P +W + A++F + G+ ++PT + D VGLL +PY I+T + Sbjct: 250 NPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVAR 309 Query: 273 LMMRFFNGRERV-MLVVSSALTAIFVYFMYVASD-VTGVIIFQCLAYFFKSFVLAACFAL 330 R RER ++SAL + ++ V D V ++ L + + Sbjct: 310 SADRM---RERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLSTMPVFWTY 366 Query: 331 PTKILDTRLIGSSVGMVNLGGQAAGFISPLVIGILVSAFSNYDYAFAFLISAAIFSVVVS 390 P+ IL + +G++N G AGF+SP ++G L + + F+ A + ++ Sbjct: 367 PSAILGGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGALVLGACLA 426 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 165/400 (41%), Gaps = 47/400 (11%) Query: 10 YKYAVLALLYLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPGG 69 Y+ ++ ++ W +D +TF I +EF L + GLL SS FLG L G Sbjct: 25 YQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASSSFLGMFLGAAIAG 84 Query: 70 WLADRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEG-SFPAASIKGVAE 128 LAD+FG +PV S++ W + G A +T L+V R G G G FP + V+E Sbjct: 85 MLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMGMEFPIG-LSMVSE 143 Query: 129 HFDKGERPKMSSVLMSSNYIGSMLAPVIIAPLILHFGWRNVFHYIGIVGI-IFAVAYWLC 187 R K ++L +G + A ++ + GWR +F + I + +F V ++ Sbjct: 144 IVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIFIALSIPAVFVFIVRRYVP 203 Query: 188 VRP--LSE-------------------RTDGGKR-PVNSKTISELMR-------LPLMWQ 218 P L E + +GGK P + I+E+ + +W Sbjct: 204 ESPRWLEEVGRDAEADAVTTKIEKNVIKANGGKPLPTPAPPINEMPKKQDKRALFAELWH 263 Query: 219 ---------LVAVWFGLSVVNKGLDSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGISTAI 269 L A+WF + GL +W+ L K+V + + +AGI I Sbjct: 264 GVYAKRTVMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSV--MYTVYISLAGIPGFI 321 Query: 270 -GGWLMMRFFNGRERVMLVVSSALTAIFVYFMYVASD--VTGVIIFQCLAYFFKSFVLAA 326 WL+ ++ V+++V SA A +VY + V +I FF + + Sbjct: 322 FSAWLLEKWGRKPTCVLMLVGSACAA-YVYGQVATAQAPVAQLIGAGLCMQFFLFGMWSV 380 Query: 327 CFALPTKILDTRLIGSSVGMVNLGGQAAGFISPLVIGILV 366 +A ++ TR + G + G+ + P +G+++ Sbjct: 381 LYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVIL 420 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 27 IDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPGGWLADRFGSRPVIVISIL 86 +D A + + I +EF L + G+L S+ F+G +L + G LAD+FG +P+ IS++ Sbjct: 42 LDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLADKFGRKPIFQISMI 101 Query: 87 MWSLFTGLTGMAWSITSLVVIRFFFGIGEG-SFPAASIKGVAEHFDKGERPKMSSVLMSS 145 +W + + L A SL + R GIG G P A + + F +R LM Sbjct: 102 IWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLA--QTLLSEFIPAKRRGKYLALMDG 159 Query: 146 NY-IGSMLAPVIIAPLILHFGWRNVF 170 N+ I + A ++ ++ + WR +F Sbjct: 160 NWPIAFICAGLMSYYVLASYSWRTMF 185 >gi|152980367|ref|YP_001352036.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 478 Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 11/192 (5%) Query: 19 YLGWCIS------YIDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPGGWLA 72 YL W ++ +D I A +A+ H+ P L ++SS+ L ++ GW+A Sbjct: 19 YLPWVVAIALFMEQLDSTIINTAIPSMAASLHVTPLSLKAVVSSYILALAVSIPISGWMA 78 Query: 73 DRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEGSFPAASIKGVAEHFDK 132 DRFG+R V +++ +++ + L G++ ++ LV R G V F K Sbjct: 79 DRFGTRRVFSVAVGLFTFSSILCGLSVNVPMLVAARILQGFSAAMMMPVGRLTVIRTFPK 138 Query: 133 GERPKMSSVLMSSNYIGSMLAPVIIAPLILH-FGWRNVFHYIGIVGIIFAVAYWLCVRPL 191 E + ++ IG +L P + LI+H W+ +F +G+ A W+ R + Sbjct: 139 SELLAAMNFVIIPALIGPLLGPT-VGGLIVHWLPWQAIFFVNVPIGL---AAQWMIHRHM 194 Query: 192 SERTDGGKRPVN 203 + RP++ Sbjct: 195 PDYRSDSPRPLD 206 >gi|152982869|ref|YP_001355198.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 430 Score = 55.1 bits (131), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 33/296 (11%) Query: 9 IYKYAVLALLYLGWCISYIDRAAITFAATHIASEFHLKPSDLGLLLSSFFLGYSLLQLPG 68 I A++A L GW + ++D IA++ + + + + F L + L Sbjct: 28 IVAMAMIANLQYGWTL-FVD---------PIAAKHGWSRAAIQVAFTIFVLTETWLVPIE 77 Query: 69 GWLADRFGSRPVIVISILMWSLFTGLTGMAWSITSLVVIRFFFGIGEGSFPAASIKGVAE 128 GW D+FG RPV+++ ++ L + A S+ +L GIG G+ + + Sbjct: 78 GWFVDKFGPRPVVLVGGILCGLGWFINSFADSLATLYFAAVISGIGAGAVYGTCVGNALK 137 Query: 129 HFDKGERPKMSSVLMSSNY-IGSMLAPVIIAPLILHFGWRNVFHYIGI-VGIIFA-VAYW 185 F +R +++ L ++ + GS + + I+ +I G+++ F Y GI GII VA + Sbjct: 138 WFP--DRRGLAAGLTAAGFGAGSAVTIIPISAMIATRGYQDAFLYFGIGQGIIVVLVALF 195 Query: 186 LCVRPLSERTDGGKRPVNSK---TISELMRLPLMWQLVAVWFGLSVVNKGL--------- 233 L P ++ D +K SE++R P+ W + A++ + V GL Sbjct: 196 LTRAPEHKKGDAVANVQQTKRDYKPSEVLREPVFWIMYAMF--VMVAAGGLMATAQLGSI 253 Query: 234 --DSWMPTYLMTVRGLDLKAVGLLLPLPYVMAGISTAIGGWLMMRFFNGRERVMLV 287 D + +++ GL L A+ L + V+ G++ GW+ + GRE M + Sbjct: 254 ARDFKVFDVQVSMMGLTLPALTFALAIDRVLNGLTRPFFGWVSDQI--GREPTMFI 307 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 875,876 Number of extensions: 36175 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 9 Length of query: 401 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 316 Effective length of database: 906,776 Effective search space: 286541216 Effective search space used: 286541216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)