BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1092.p
         (115 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981748|ref|YP_001351855.1| translation initiation inhibito...    73   5e-15
gi|152981670|ref|YP_001352577.1| translation initiation inhibito...    64   3e-12
gi|152980143|ref|YP_001353175.1| YigF family translation initiat...    54   2e-09

>gi|152981748|ref|YP_001351855.1| translation initiation inhibitor
           [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 72.8 bits (177), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 8   PFSKLRIVNGLAFLSGEVPLTSEGTIPEG--ISAQTQLVIERIAHTLGEAGLKLTNVVSA 65
           P+S++    G  +LSG +PL + G   +G  I  QT+ V++ I   L   GL   +V+ +
Sbjct: 45  PYSQMVAHGGTIYLSGVLPLNAAGNAIQGTTIEEQTKAVLDHIGEKLKSQGLSHDDVLMS 104

Query: 66  TVYLTDKNDFSEFNEVYHNFFSAPYPARTTL-VADLVLPAKIEIAVV 111
           TVYL D NDF+  N VY  +F    PAR T+ VA +   A IEIAV+
Sbjct: 105 TVYLKDLNDFAAMNRVYGEYFKTNPPARATVQVARIPRDALIEIAVI 151


>gi|152981670|ref|YP_001352577.1| translation initiation inhibitor
           [Janthinobacterium sp. Marseille]
          Length = 131

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 8   PFSKLRIVNGLAFLSGEVPLTSE-GTIPEGISAQTQLVIERIAHTLGEAGLKLTNVVSAT 66
           P+++     G AF SG++P+  E G +PEG+ AQT+  +  +A  L  AG  + +V+  T
Sbjct: 18  PYAQGTQALGFAFCSGQLPINPETGAVPEGVEAQTRQSLSNVAAVLAAAGASMDDVLKTT 77

Query: 67  VYLTDKNDFSEFNEVYHNFFSAPYPARTTL-VADLVLPAKIEIAVVA 112
           V+L D NDF   N +Y  +F    PAR+T+ VA L     +E+  +A
Sbjct: 78  VFLKDMNDFPLMNAIYATYFPGDPPARSTIEVARLPKDVLVEVEAIA 124


>gi|152980143|ref|YP_001353175.1| YigF family translation initiation
           factor [Janthinobacterium sp. Marseille]
          Length = 116

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 9   FSKLRIVNGLAFLSGEVPLTSEGTIPEGISAQTQLVIERIAHTLGEAGLKLTNVVSATVY 68
            S++ I NG  +L+G++   +E T  + I  QT+ V+  I   L EAG   T ++S  +Y
Sbjct: 12  LSEVAIHNGTVYLAGQI---AEDT-AQNIQGQTREVLGHIDRLLAEAGSDKTRILSCQIY 67

Query: 69  LTDKNDFSEFNEVYHNFFSAPY-PARTTLVADLVLPAK-IEIAVVAS 113
           + D  DF   NE ++ +    + P R T+ A    P + +EI VVA+
Sbjct: 68  IADVKDFDGMNEAWNEWVPQGHTPPRATVGAQFPDPTRLVEIIVVAA 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 246,551
Number of extensions: 8548
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 43
Effective length of database: 954,837
Effective search space: 41057991
Effective search space used: 41057991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)