BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1091.p (412 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 106 2e-24 gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 91 9e-20 gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 80 2e-16 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 111/431 (25%), Positives = 193/431 (44%), Gaps = 42/431 (9%) Query: 4 QIIVLGAGMVGVSTALALQERGYDVALIDRRAP-GKETSYGNAGFIQREAVRPYAFPREW 62 Q+ V+GAG++GVSTA L E G++V +I+R +E SYG++G + ++ P+A P Sbjct: 2 QVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGVP 61 Query: 63 QTLCKVIAGSGNDVHYNLAATLKILPTLARYWHESAAVRYS------RTIGSYAALIRHS 116 ++ + S V N +L + R+ E+ RY + IG Y+ I Sbjct: 62 RSFLSYLLKSEAPVLLNQPWRPSMLGWMRRWMKEADIERYRINRERMQRIGFYSRDIMQM 121 Query: 117 ISEHEKLIEAANAGELVRKDGWLEAYRNSEKFDKTIKHANSIAAEHGLNVAIYDSQGLQR 176 + E +L + + G+L+ +R +E+ + K + +EH + + D+ Sbjct: 122 LRERHQL-------DYEQTPGYLQLFR-TERDLQLAKTSFDYLSEHNIPHKLLDAGQAHA 173 Query: 177 AEPALN--NSLAGAIHWRDTWTISDPGELVERYAALFQRNGGTILNGD-ADTLRFNNNGW 233 + ALN LAGA++ + + P + A Q G L G ++ + G Sbjct: 174 VDSALNPNTPLAGALYLPEDEAGNCP-LFTRQIRAQAQAMGVEFLFGSKVKSIEESKRGV 232 Query: 234 QVHTSDGSITASDAVVCLGPWASKVVEPLGYKIPLFIKRGYH-----RHYKSESGLKLPL 288 + D S +A VV G ++K++ PLG +PL + Y R++ ES + Sbjct: 233 HLQIDDHSFSAECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNF--ESAPVAAV 290 Query: 289 LDAERGYALVPMKRGLRITTGAEFAELGAAPTPVQLNAAEVFADELLRLGAP-------- 340 +D A+ M + +R+ AE A LN LL++G Sbjct: 291 VDEAYKIAITRMGKRIRVAGTAELGSNNAELRQTALNT-------LLKVGYDWFPDACNY 343 Query: 341 VESKPWVGARPCVADMLPLVGSAGRHRGLWFHFGHGHQGFTLGPTTSRLLADLITGSSPY 400 + W G+ + D PL+G A R R ++ + GHG G+ + + ++LAD+I+G +P Sbjct: 344 NTAAFWSGSSLALPDGAPLLG-ACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPD 402 Query: 401 IDPRPYDPRRF 411 ID P R+ Sbjct: 403 IDLDGLTPSRY 413 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 110/439 (25%), Positives = 188/439 (42%), Gaps = 44/439 (10%) Query: 4 QIIVLGAGMVGVSTALALQERGYDVALIDRRAPG--KETSYGNAGFIQREAVRPYAFPRE 61 ++IVLG+G++G S+A L + G++V +I+R+ PG +ETS+ N I P+A P Sbjct: 2 KVIVLGSGIIGTSSAWFLNKLGHEVTVIERQ-PGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 62 WQTLCKVIAGSGNDVHYNLAATLKILPTLARYWHESAAVRYSRTIGSYAALIRHSISEHE 121 + K + + Y + E R + I A+ +S Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYS----R 116 Query: 122 KLIEAANAGELVRKD----GWLEAYRNSEKFDKTIKHANSIAAEHGLNVAIYDSQGLQRA 177 + ++A A + D G L Y + ++FD ++ A + + G + + R Sbjct: 117 QTLQAVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAK-LMRDLGCPRDSISADEVVRI 175 Query: 178 EPALNNSLAGAIHWRDTWTISDPGELVERYAAL----------FQRNGG-TILNGDADTL 226 EPAL S+ I D + G++ + + L FQ N T L + Sbjct: 176 EPALA-SIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGA 234 Query: 227 RFNNNGWQVHTSDG--SITASDA-VVCLGPWASKVVEPLGYKIPLFIKRGYHRHYKSESG 283 G +V DG + +DA V+ +G +++++V PLG + ++ +GY YK Sbjct: 235 NAKITGVEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDP 294 Query: 284 LKLPLLD-AERGYALVPMKRG--LRITTGAEFA----ELGAAPTP-VQLNAAEVFADELL 335 P + + GY LV + G LR+ E +L A + E+F D Sbjct: 295 AAAPTVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDAC- 353 Query: 336 RLGAPVESKPWVGARPCVADMLPLVGSAGRHRGLWFHFGHGHQGFTLGPTTSRLLADLIT 395 PV W G RP +P +G ++ L+ + GHG G+T+G + R LA++++ Sbjct: 354 DYDNPVY---WTGLRPLTPSNVPYIGKT-KYSNLYLNTGHGTLGWTMGCGSGRALAEIVS 409 Query: 396 GSSPYIDPR----PYDPRR 410 G P +D + PY P R Sbjct: 410 GLQPDLDFKFTGMPYRPSR 428 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 102/427 (23%), Positives = 177/427 (41%), Gaps = 40/427 (9%) Query: 4 QIIVLGAGMVGVSTALALQERGYDVALIDRRAPG--KETSYGNAGFIQREAVRPYAFPRE 61 ++IVLG+G++G ++A L + G++V +++R+ PG +ETS+ N I P+A Sbjct: 64 KVIVLGSGIIGTASAWFLNKAGHEVTVVERQ-PGAAQETSFANGCQISVSHATPWANKGA 122 Query: 62 WQTLCKVIAGSGNDVHYNLAATLKILPTLARYWHESAAVRYSRTIGSYAALIRHSISEHE 121 T+ K + + Y A + E R I A+ +S + Sbjct: 123 PLTILKALGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYSRQTLQ 182 Query: 122 KLIEAANAGELVRKDGWLEAYRNSEKFDKTIKHANSIAAEHGLNVAIYDSQGLQRAEPAL 181 + + + G L Y + FD+++ A S+ E G + + EPAL Sbjct: 183 AVRQEVDIDYDCLTRGILHFYTQQKDFDESLASA-SVMRELGCPREPLTVEQAVQLEPAL 241 Query: 182 NNSLAGAIHWRDTWTISDPGELVERYAAL----------FQRNGGT---ILNGDADTLRF 228 + + I D + G++ + L F+ N I G R Sbjct: 242 AH-IRKQIVGADFTETDESGDIYKFTTGLARKAQERGVHFEFNTTVTRLITEGTGAAARV 300 Query: 229 NNNGWQVHTSDG---SITASDAVVCLGPWASKVVEPLGYKIPLFIKRGYHRHYKSESGLK 285 G +V +G S+ A V+ +G ++ +++PLG + ++ +GY Y + Sbjct: 301 T--GVEVINPEGRHMSLHADAFVMAMGSFSVPMLKPLGINLMIYPGKGYSATYPIVNPDL 358 Query: 286 LPLLD-AERGYALVPMKRG--LRITTGAEFA----ELGAAPTP-VQLNAAEVFADELLRL 337 P + + GY LV + G LR+ EF EL A + E+F D Sbjct: 359 APAVSLIDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPD----- 413 Query: 338 GAPVESKP--WVGARPCVADMLPLVGSAGRHRGLWFHFGHGHQGFTLGPTTSRLLADLIT 395 A S P W G RP +P +G + L+ + GHG G+T+G + R +AD+I+ Sbjct: 414 -ACDYSNPAYWAGLRPLTPSNVPYIGKT-KFSNLYLNTGHGSLGWTMGCGSGRAIADIIS 471 Query: 396 GSSPYID 402 G P ++ Sbjct: 472 GVQPEVN 478 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,021,580 Number of extensions: 45597 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 3 Length of query: 412 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 326 Effective length of database: 903,079 Effective search space: 294403754 Effective search space used: 294403754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)