BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1088.p
         (342 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980899|ref|YP_001354766.1| nitrilase [Janthinobacterium sp...   171   7e-44
gi|152979847|ref|YP_001354170.1| nitrilase [Janthinobacterium sp...   155   3e-39

>gi|152980899|ref|YP_001354766.1| nitrilase [Janthinobacterium sp.
           Marseille]
          Length = 355

 Score =  171 bits (432), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 168/320 (52%), Gaps = 12/320 (3%)

Query: 8   KYKVAVVQAAPEFLDLEKGIVKAIKLIDEAADAGASLIAFPEVWLPGYPWWIWLDSPAWG 67
           K+K A   AAP + D    I KA  LI EAA  GASLIAFPE ++  +P W  + +P   
Sbjct: 6   KFKAAACHAAPIYFDTPATIDKACDLIAEAARNGASLIAFPEAFVSAFPIWCGVWAPVET 65

Query: 68  MQFVRRYFENALVIGSEQFERICAAAARRKIHVVLGFAER---DGGTLYLAQAIIDDAGK 124
            +F  +   +A+ I   +  ++  AA R  + V +G  E      G ++    +I D G 
Sbjct: 66  HEFFFKLASSAIEINGPEVAQLREAARRHGVFVSMGINEGTPISMGCVWDTNILIGDDGS 125

Query: 125 VISTRRKLKPTHVERSVYGEGDGSDLAVHDSALGRIGALCCAEHVQPLSKYAMYSQHEQI 184
           +++  RKL  TH E+  +  GDGS L V D+ +GRIGAL C E+   L+++++ +Q E +
Sbjct: 126 ILNRHRKLIATHWEKLAWASGDGSGLRVVDTRIGRIGALVCGENTNALARFSLMAQGENV 185

Query: 185 HVAA----WPSFSVYKGAAFQLSAAANNGASQLYAVEGGCFVLAPCATVSKEMLEMLIDN 240
           H++A    WP+    +  A+ L A+    A    A EG  F +     +  E ++M+  N
Sbjct: 186 HISAYSPRWPTHPSGE-VAYDLEASIRLRAGAA-AFEGKMFNIVASGFLPPEAIDMISRN 243

Query: 241 PAKAPLLQE--GGGFAMIYGPDGAPLCEPIPETQEGLLYADVDLGMIGVAKAAYDPVGHY 298
             +   L E      +MI GPDG P+ + + + +EG++YAD+DL    V K   D VG+Y
Sbjct: 244 DPRVRRLMEEASKSVSMIMGPDGMPISDTL-QDEEGIVYADIDLAKCVVPKQFQDVVGYY 302

Query: 299 SRPDVLRLLFNRKRVQRVEI 318
           +R DV  L  NR+ +  VE 
Sbjct: 303 NRFDVFELKVNRRALTPVEF 322


>gi|152979847|ref|YP_001354170.1| nitrilase [Janthinobacterium sp.
           Marseille]
          Length = 316

 Score =  155 bits (393), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 157/339 (46%), Gaps = 42/339 (12%)

Query: 7   TKYKVAVVQAAPEFLDLEKGIVKAIKLIDEAADAGASLIAFPEVWLPGYPWWIWLDSPAW 66
           T +KVAV QAA    D +    KA+ LI +A  AGA L+ FPE +L GYP      +P  
Sbjct: 2   TIFKVAVAQAASHPDDAQASTAKAVDLIGQAHRAGAGLLVFPEAFLGGYPKGASFGAPVG 61

Query: 67  -----GMQFVRRYFENALVIGSEQFERICAAAARRKIHVVLGFAERDGGTLYLAQAIIDD 121
                G Q    YF NA+ +   + E I  A     +  V+G  ER+ GTLY      + 
Sbjct: 62  MRKPEGRQAYLDYFNNAIDLKGPEVEAIAEATRNTGMFAVIGCIERELGTLYCTVLFFNG 121

Query: 122 AGKVISTRRKLKPTHVERSVYGEGDGSDLAVHDSALGRIGALCCAEHVQPLSKYAMYSQH 181
           A  ++   RKL PT  ER ++G GDGS + V D+ LG+IGA+ C E+  P+ +  MYSQ 
Sbjct: 122 AQGLVGKHRKLMPTAGERLIWGFGDGSTMPVFDTPLGKIGAVICWENYMPMLRMYMYSQG 181

Query: 182 EQIHVA-------AW-PSFSVYKGAAFQLSAAANNGASQLYAVEGGCFVLAPCATVSKEM 233
             I+ A        W PS                    Q  A+EG CFVL  C  + +  
Sbjct: 182 IGIYCAPTADDRDTWVPSM-------------------QHIALEGRCFVLTACQYIKRSA 222

Query: 234 LE-----MLIDNPAKAPLLQEGGGFAMIYGPDGAPLCEPIPETQEGLLYADVDLGMIGVA 288
                   L D+P    +L  GG  + I  P G  L  P  E  E LLYA++D   I   
Sbjct: 223 YPATHECALGDDPET--VLMRGG--SAIIDPLGKVLAGPNFEG-EALLYAEIDTDQIVRG 277

Query: 289 KAAYDPVGHYSRPDVLRLLFNRKRVQRVEIVADERSSNQ 327
           K  +D  GHY+RPDV +L  + +    V I  D    N+
Sbjct: 278 KFDFDVAGHYARPDVFQLAVDTRAKSAVNIQQDNMEPNK 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 856,601
Number of extensions: 38540
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 258
Effective length of database: 910,473
Effective search space: 234902034
Effective search space used: 234902034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)